Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq10079 132 9e-26 >seq10079 Length=19992 Score = 132 bits (146), Expect = 9e-26 Identities = 184/255 (72%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 183055 GAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACA 183114 ||||| ||||||||| | ||| | |||||||| ||||| |||||||| | |||||||| Sbjct 12918 GAAGGCAAAATGCATGGATTTCTGCGAATGTATTGGGCCAAAAAGATTTTGGAATGGACC 12859 Query 183115 AGAACTCCGGAAGATGCTTTG-AGTTATAGTATCTATATGAACAATAAGTACGAACTAGA 183173 | || ||||| || || |||| || || | | ||| |||||||| | || Sbjct 12858 GCCTCACCAGAAGAAGCACTGGAGTT-TACAATATTGCTAAACGATAAGTACAGCTTGGA 12800 Query 183174 CGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACACGATAG 183233 || ||||||||| || ||||| ||||| |||||||||||| | || | || || Sbjct 12799 TGGGCGGGATCCTAATGGCTACGTGGGTTGCATGTGGTCTATTGGTGGGGTGCATGACCA 12740 Query 183234 AGCGTGGAAAGAAAGACCTATATTTGGAAAGATAAGATATATGAATTATGAGAGTTCTAA 183293 || ||||| ||| || |||| |||||||||||| | |||||||| ||| || | | || Sbjct 12739 AGGCTGGAAGGAACGATCTATCTTTGGAAAGATACGCTATATGAACTATCAGGGGTGCAA 12680 Query 183294 GAAGAAATTTGATGT 183308 ||||| ||||| Sbjct 12679 ACGCAAATTCGATGT 12665 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 183154 AACAATAAGTACGAACTAGACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCT 183213 ||| |||||||| | || || ||||||||| || ||||| ||||| ||||||||| Sbjct 12621 AACGATAAGTACAGCTTGGATGGGCGGGATCCTAATGGCTACGTGGGTTGCATGTGGTCT 12562 Query 183214 ATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATATTTGGAAAGATAAGATAT 183273 ||| | || | || || || ||||| ||| || |||| |||||||||||| | ||| Sbjct 12561 ATTGGTGGGGTGCATGACCAAGGCTGGAAGGAACGATCTATCTTTGGAAAGATACGCTAT 12502 Query 183274 ATGAATTATGAGAGTTCTAAGAAGAAATTTGATGT 183308 ||||| ||| || | | || ||||| ||||| Sbjct 12501 ATGAACTATCAGGGGTGCAAACGCAAATTCGATGT 12467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903024991712000