Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq20705 197 3e-45 >seq20705 Length=54059 Score = 197 bits (218), Expect = 3e-45 Identities = 568/862 (66%), Gaps = 15/862 (2%) Strand=Plus/Minus Query 110302 ACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCA 110361 |||||||||| || ||||| ||||||||| | |||||| | | ||||| | || Sbjct 39168 ACTATTTTGGATTTAAAACGCTTGAACGTTCATATTTATTGAAGATAAATGGGAAAATTG 39109 Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421 |||||| || || || ||||| | ||||| || ||||| || ||||| | ||||| Sbjct 39108 CTGAACGCCCACAGCATATGTTAATGCGTGTGGCCATTGGAATACATGGCGAAGATATCG 39049 Query 110422 AAGCTGTTATTGAATGTTATGA--TGTATTAAGTAAAAAGAAAGCT-ATTCATGCTACTC 110478 | || | ||||| || | || || | | || | | | |||||| | | Sbjct 39048 ATGCGGCAGTTGAAACGTACAACTTGCTTTCCG---AGCGATATTTCACCCATGCTTCGC 38992 Query 110479 CTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAA 110538 | || || || |||| || ||| | ||| || | || || |||||||| | Sbjct 38991 CAACACTTTTCGCGGCAGCTACAAATCGGCCGCAACTGTCGTCGTGTTTTCTTCTTACGA 38932 Query 110539 TTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTA 110598 | | |||||| |||||||| || | | | | | || || || | || || | Sbjct 38931 TGGTGGCTGATTCAATTGAAGGAATATTTAAATCCGTCGAACAATGCGCAATGATATCCA 38872 Query 110599 AAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCG 110658 || |||| ||||| || || ||||||| ||||| | ||||| | ||| Sbjct 38871 AATCAGCTGGTGGAATCGGGATAAACGTTCACTGCATTCGTGCTAAAGGTACTTCGATCT 38812 Query 110659 CAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTG 110718 | | || || |||||| ||| | || |||||| ||||||| || ||| || | Sbjct 38811 GTGGAACTAATGGAACTTCAAATGGTTTGGTGCCAATGCTAAGAGTTTTTAACAACGTGG 38752 Query 110719 CAAAATATGTGAATCA---AGGTGGTAAGAGAAATGGCTCATTTGCTATCTATCTCGAAC 110775 | ||||| | || |||||| ||| | ||| | ||||| || ||| | |||| Sbjct 38751 CTCGCTATGTTGACCAGGGAGGTGGAAAGCGTCCTGGTGCCTTTGCAATTTATTTAGAAC 38692 Query 110776 CTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCA-AGGATTTGAAGAA 110834 ||||||||||||| | |||||||| |||| |||| ||||| || || || ||| Sbjct 38691 CTTGGCATTCAGACGTGTTTGAATTTTTAG-ACTTAAAAAAAAACACTGGCAAGGAGGAA 38633 Query 110835 CAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTT 110894 | | || || ||| | || ||||| | ||||| ||||| | || ||||| |||||| Sbjct 38632 AATCGTGCCCGAGATCTTTTCTATGCTTTATGGATACCAGATCTTTTTATGAAGCGTGTT 38573 Query 110895 CAAGAAAATG-GCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGT 110953 ||| |||| | || ||||| | ||||| || ||| | |||||| || |||||| Sbjct 38572 GAAGCTAATGAGGAT-TGGTCATTGATGTGCCCACATAAATGTCCTGGCTTACATGATGT 38514 Query 110954 ATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG-CAAGTTTCGCA 111012 | ||| |||||||||| | || || | ||||||||| | ||||| | | | | Sbjct 38513 TTGGGGAGAAGAGTTTGATAAACTCTATGTCAAATATGAACAGGAAGGCCGTGCTAATCG 38454 Query 111013 AACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAA 111072 ||| |||| ||| ||| || ||||| || |||| || ||||| |||||||| | Sbjct 38453 AAC-AATTAAAGCGCAATCTCTGTGGTTTGCTATAATTGAGTCTCAAGTAGAAACTGGTA 38395 Query 111073 CTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAA 111132 |||| ||||| ||| |||||| |||||||||| ||||||| || | |||| Sbjct 38394 CTCCATATATGCTGTTCAAAGATTCCTGTAATCGCAAAAGTAATCAACAAAACGTTGGAA 38335 Query 111133 CAATTAAGTCTAGTAATTTGTG 111154 | ||||| | || ||||| || Sbjct 38334 CCATTAAATGCAGCAATTTATG 38313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186292753466200