Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq20705 163 3e-35 seq30232 89.7 5e-13 >seq20705 Length=54059 Score = 163 bits (180), Expect = 3e-35 Identities = 919/1452 (63%), Gaps = 52/1452 (4%) Strand=Plus/Plus Query 146549 CAACAGTGAATTGTTGTGTGTGCGCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTT 146608 ||||||| || || | || || ||||||||||| ||||| |||||||| || |||| Sbjct 37342 CAACAGTAAACTGAATAGCGTTTGCAGCAGGTTTTGTTCGCAAGTAATACATTCCTGTTT 37401 Query 146609 TGAGGCCACATCGCCACGAGTGATTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCG 146668 | || ||| ||| |||| | || |||||||||| | | || | ||||| | Sbjct 37402 TAAGCCCAGCCTTCCATGAGTAAAAATGTATCGAAGTCAGTTTTCCATAGTTGGGCTCTG 37461 Query 146669 CCACGAAAAGATTAAACGATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCT 146728 ||||| || |||||| || || ||||||||||| ||||| | || || ||||| | Sbjct 37462 CCACGTGAATATTAAAGGACTGACTTTGATCTATAAAAGCACCCCTATCAGCAGCCATTT 37521 Query 146729 CAATCATGCGTTTTGTCTTCATTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTG 146788 || | ||| |||||||| |||| ||||||| | ||| | | Sbjct 37522 TTATTGTTGATTTAACGGAGATTTCCCATACGGTCTTGTACAAGTCTCGGACGTGTTGAG 37581 Query 146789 GAATACCTTCAATGTTTTGAATAGAGCC----CTTGTGCGCAAAAATAGTGTTTCGTATT 146844 ||||| ||||||||||||||||| || |||| ||| | ||| || | Sbjct 37582 GAATAGAATCAATGTTTTGAATAGAACCACGGCTTG---------ATATTATTTGGTTCT 37632 Query 146845 TC-GGGCGT----GTAAAGGTTTAGTTTAATGAGGTCATCAATTAAATACTGATTGACCA 146899 || | ||| | |||| | || | | || | || | ||||| || | Sbjct 37633 TCATGTCGTCATCCCATAGGTCCAATTCTGTCAAATCTCGTAGTAGGTGATGATTTACTA 37692 Query 146900 CTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAG 146959 |||| || || || | | ||| |||||| || | ||| ||| | ||||| || | Sbjct 37693 CTTGGAATTCACCAGATAACACCCGTCTGGTGTAAATATTAGATGTGTACGGCTCGAAGG 37752 Query 146960 ACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATG 147019 | |||||||| || | ||||||||| |||| ||| |||||||| || | | ||| | Sbjct 37753 ATTCATTATTACCCATTATTTGGGCAGTGGATGCTGTAGGCATTGGTGCAATAAGCAAAG 37812 Query 147020 AATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAA--GTTTGCCAGTCCCACATCGA 147077 |||| || | |||| | ||| | || || || | ||||||||| | Sbjct 37813 AATTGCGAACGCCGT--GTTTCTTAATTGACGTTTTAAGTGTATTCCAGTCCCATAAATC 37870 Query 147078 CGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGC 147137 | || || ||||||||||| ||||| | | ||| ||| | || ||||| | Sbjct 37871 TGTTGGAGTTTTATTCCACATGTCATACTGTAAAATACCTTTACTCACTGGGCTGCCTTC 37930 Query 147138 GAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATA 147197 | || |||| || | || || | || || |||||||||||||||||| | Sbjct 37931 ATATGTTTCGTAGTAGCCATGTTCTTGTGCGAGCTCGCAACTTGCCTCGAGCGCTCCAAA 37990 Query 147198 GTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCAT 147257 ||||| || ||| || || | |||||| | | || || ||||| |||||||| || Sbjct 37991 ATATATTGTCTCGAAAATCTGCTGGTTTAGAAGAGATGCCTCATCGCTTTCGTAAGG-AT 38049 Query 147258 A-CGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCT 147316 | |||| | | | |||||||| || ||||| | ||| | || ||||| || ||| Sbjct 38050 ACCGCATTAAGATCAGTGCATCGGCAAAGCCCTGAACACCAATTCCAATAGGACGGTGCC 38109 Query 147317 TTTCGTTGCTGCGCTTCGCGCTC-GCTATGGGATAGTGGTTGCGATCAATAATCTTGTTG 147375 || ||| || || ||| | || ||||| |||| |||||| || ||||| Sbjct 38110 TTAAGTTCGATTTTTTAGC-CTCTGGTAGAGGATAAAAGTTGATATCAATTATTTTGTTC 38168 Query 147376 AGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCT 147435 | ||| |||| || |||| ||| | ||| | || || || | | | Sbjct 38169 AAGTTTTTTGTAACAATCTTTGTTACATCTTTCAATTTTTTAAAGTCGTATTT---TTTT 38225 Query 147436 TCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCG 147495 ||| | || | || | ||| || || || | ||||| || || | || || Sbjct 38226 TCGGGAGTGACAAACATATTGAGGGCTATGGAAGCTAAGTTGCAAACAGCAATTTCATCA 38285 Query 147496 GCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTT 147555 | | || |||| ||| ||||||| || | ||||||||||| ||| ||| | ||| Sbjct 38286 GGGGCGGAATACTCCACAATTTCGGTACATAAATTGCTGCATTTAATGGTTCCAACGTTT 38345 Query 147556 TGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCG 147615 || ||||| ||||| ||||| || | |||||||| ||||| || || || || || Sbjct 38346 TGTTGATTACTTTTGCGATTACAGGAATCTTTGAACAGCATATATGGAGTACCAGTTTCT 38405 Query 147616 ACTTGCGTTTCAACGATA--AACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGA-TAG 147672 ||||| | |||| ||| || | | ||| |||||| | | | ||| ||| Sbjct 38406 ACTTGAGACTCAATTATAGCAAACCA--CAGAGATTGCGCT-TTAATTGTT--CGATTAG 38460 Query 147673 --CGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGG 147730 ||||| || | ||| || | || | |||||||| || || | ||| Sbjct 38461 CACGGCCTTCCTGTTCATATTTGACATAGAGTTTATCAAACTCTTCTCCCCAAACATCAT 38520 Query 147731 CAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTC 147790 | ||| ||||| | ||| || ||||||| ||||| || | || | ||| || Sbjct 38521 GTAAGCCAGGACATTTATGTGGGCACATCAATGACCAATCCTCATTAGCTTCAACACGCT 38580 Query 147791 GCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATC----GCGCGCTTTGCAATCC 147846 |||||| ||||| || | ||| | || || | |||||| || || ||| ||| Sbjct 38581 TCATAAAAAGATCTGGTATCCATAAAGCATAGAAAAGATCTCGGGCACGATTT----TCC 38636 Query 147847 TCGGCGCCCATGTTGCGTTTCAAAT-TAAGCACGCTATAGATGTCGGCGTGCCAGGGTTC 147905 || ||| |||| ||| || | ||| | | | | | ||| | ||||| ||||| Sbjct 38637 TCCTTGCCAGTGTTTTTTTTTAAGTCTAAAAATTC-AAACACGTCTGAATGCCAAGGTTC 38695 Query 147906 AATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGCCCTGGTCGACATGGCGCACCAT 147962 | || | || | ||||| ||||||| || |||||||| |||| ||| ||| Sbjct 38696 TAAATAAATTGCAAAGGCACCAGGACGCTTTCCACCTCCCTGGTCAACATAGCGAGCCAC 38755 Query 147963 GTTGTTAAACAC 147974 ||||||||| || Sbjct 38756 GTTGTTAAAAAC 38767 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | ||||| || | | |||||||||||||||||||||||| || || Sbjct 6865 ACGGAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGAATGTTGTAGTCGGACAGAGT 6924 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| | ||||| || | | |||| ||||| |||||||||||||| || || Sbjct 6925 GCGACCATCTTCCAATTGTTTGCCAGCAAAGATCAGACGTTGTTGATCTGGAGGAATTCC 6984 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||||| || ||| || ||| | | ||| | ||||| | || || || || | Sbjct 6985 CTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATTGTATCCGAAGGTTCGACCTCAAG 7044 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || || || || || | |||||||||||| Sbjct 7045 GGTGATGGTCTTGCCCGTTAGGGTCTTAACGAAAATCTGCAT 7086 >seq30232 Length=15380 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | ||||| || || |||||||||||| || || || || || Sbjct 15122 ACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 15181 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || || | |||| | |||||| |||||||| || |||||||| || || | Sbjct 15182 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGA 15241 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || | | || | ||||| | ||||||||||||| || | || || Sbjct 15242 ATCTTGGCCTTAACATTCTCAATGGTATCTGAGGGCTCCACTTCGAGAGTGATGGTCTTG 15301 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| || || | ||| |||||||| Sbjct 15302 CCAGTCAAGGTCTTCACGAAGATCTGCAT 15330 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 ||||| || | ||||| || | | ||||| || || |||||||||||| || || Sbjct 14882 CGCAAACGGAGCACCAAGTGCAATGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTG 14941 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || || || ||||| || || | |||| | |||||| |||||||| || |||||| Sbjct 14942 CGTCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCT 15001 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || || || || | | || | ||||| | ||||||||||||| Sbjct 15002 TCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTATCTGAGGGCTCCACTTCGAGA 15061 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || ||||||| || || | ||| |||||||| Sbjct 15062 GTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 15102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476407448712000