Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq17074 179 4e-40 seq5260 138 1e-27 >seq17074 Length=21176 Score = 179 bits (198), Expect = 4e-40 Identities = 338/491 (69%), Gaps = 6/491 (1%) Strand=Plus/Plus Query 146842 AAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGGGAAGGGTCGGGGGTTC 146901 ||||| ||||| | || |||| ||| | ||| || || ||||||||||| || || || Sbjct 3918 AAATCCTCTATATTCTGCACCTGCCGCCGAATGTTTAGTTTGGGGAAGGGACGAGGCTTG 3977 Query 146902 CTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGG 146961 | |||||| ||||| || || ||||| ||| | ||||| || | ||| ||| | Sbjct 3978 CGCTTCAGCTGCTCCTTCAGAGGATCAACGTGATTGCGATAGACATGGGTGTCGCCCGTG 4037 Query 146962 GTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGC 147021 ||||||||| || ||||| || || ||||| || || | |||| | ||||||||| Sbjct 4038 ACGTGCACAAACTCGCCCGGTCGCAGACCCGTCACATGCGCGATCATGCACGTGAGCAGC 4097 Query 147022 GAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGC 147081 | ||| || ||||||||||| || ||||| ||||| || | | ||| || ||| Sbjct 4098 GCATAGGATGCAATGTTGAAGGGCACACCCAGACCCATATCAGCACTGCGCTGATAGAGC 4157 Query 147082 TGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGC 147141 ||||| || ||||| || | ||||| || |||||| ||| ||||||||||||||| Sbjct 4158 TGGCAGGATAGCTCGCCCTGCGCCACATAGAACTGGGCCAGACAGTGGCACGGCGGCAGT 4217 Query 147142 GCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGG 147201 ||||| || | |||| || ||||| | || | | || || | | || || Sbjct 4218 GCCATCTGTGGGATATCCGATGGATTCCACGAGGACATGATCATGCGTC-GATCGTTCGG 4276 Query 147202 TTCCT--CTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGT 147259 || | | | || | || || | ||| || || || |||| ||| ||| Sbjct 4277 ATCGTGGCGT-ATGGTGTGTATGACGCGTTGCAGTTGATCGACTCCCTCGCCGGAATAG- 4334 Query 147260 TTGTC-CCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGC 147318 | ||| | |||| | |||| |||| |||||||| | |||||| ||||| || || ||| Sbjct 4335 TCGTCGCTGCAGCCGCGGTACTTGGCGCCAAAGTGACGCCACTGAAAGCCATATACCGGC 4394 Query 147319 CCCAGGTCGCC 147329 ||||||||||| Sbjct 4395 CCCAGGTCGCC 4405 >seq5260 Length=19401 Score = 138 bits (152), Expect = 1e-27 Identities = 172/236 (73%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 146917 TTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCC 146976 |||| || ||||| ||||| | || || |||| ||| |||| ||||||||||||||| Sbjct 12350 TTCAATGGATCCACATGGTTCAAATACACATGCGTGTCTCCCATGGTGTGCACAAAGTCG 12291 Query 146977 CCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATG 147036 |||||||| ||||| ||||| || || | |||||||||||||| || || ||| ||| Sbjct 12290 CCCGGCTTGAGGCCAGTCACATGAGCGATCATGTAGGTGAGCAACGCATACGAGGCAATG 12231 Query 147037 TTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCC 147096 || ||||| || |||| |||||||| | | || || | ||| || || ||||| Sbjct 12230 TTAAAGGGCACACCCAAACCCATGTCAGCGCTTCGTTGATATAACTGACAGGACAGCTCG 12171 Query 147097 C------CGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 | | | || ||| || |||||| | | |||||| |||||||||||||| Sbjct 12170 CCACGATCCTGGGACACATAGAACTGGGCGAAGCAGTGGCAAGGCGGCAGCGCCAT 12115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583238558880000