Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq20705 549 3e-151 seq13173 190 3e-43 >seq20705 Length=54059 Score = 549 bits (608), Expect = 3e-151 Identities = 1264/1875 (67%), Gaps = 34/1875 (2%) Strand=Plus/Plus Query 68374 GTAAACTGAATGG-GTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAG 68432 ||||||||||| | || | | || |||||||| || | || ||||| || ||||| || Sbjct 37347 GTAAACTGAATAGCGTTTGCA-GCAGGTTTTGTTCGCAAGTAATACATTCCTGTTTTAAG 37405 Query 68433 ACCTAGACT-CCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTA 68491 || || || |||| ||| ||||| || || ||||| ||| | || || || | Sbjct 37406 CCC-AGCCTTCCATGAGTAAAAATGTATCGAAGTCAGTTTTCCATAGTTGGGCTCTGCCA 37464 Query 68492 TATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTA 68551 |||||||| | || ||||||||||| || ||||| || ||||| || |||||||||| Sbjct 37465 CGTGAATATTAAAGGACTGACTTTGATCTATAAAAGCACCCCTATCAGCAGCCATTTTTA 37524 Query 68552 TAATACTCTTTTGA-GGA-ATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGG 68609 | | | ||| | ||| |||||||| | ||||| | | | | || | | || Sbjct 37525 TTGT--TGATTTAACGGAGATTTCCCATACGGTCTTGTACAAGTCTCGGACGTGTTGAGG 37582 Query 68610 AA--GGCTCG-TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATC 68666 || | || | |||||||| || |||| ||||| ||| ||||| || || || Sbjct 37583 AATAGAATCAATGTTTTGAATAGAACCACGGCTTGATATTATTTGGTTCTTCATGTCGTC 37642 Query 68667 ATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTC 68726 || ||| | | || || ||| ||| || || || |||| |||| ||| ||||| Sbjct 37643 ATCCCATAGGTCCAATTCTGTCAAATCTCGTAGTAGGTGATGATTTACTACTTGGAATTC 37702 Query 68727 CCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATT 68786 ||||||||||| | | |||||||||||| || || || || | ||||||||||| Sbjct 37703 ACCAGATAACACCCGTCTGGTGTAAATATTAGATGTGTACGGCTCGAAGGATTCATTATT 37762 Query 68787 TCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAG 68846 |||| ||||| ||||| ||||| || ||||| ||||| | | ||| ||| | || Sbjct 37763 ACCCATTATTTGGGCAGTGGATGCTGTAGGCATTGGTGCAATAAGCAAAGAATTGCGAAC 37822 Query 68847 ACCATGTGTTATGATTTTATCTTTTAGATGT-TTCCAATCCCAAAGATCAGATGGTACAA 68905 || ||| || | | || | ||||| ||| ||||| ||||| | ||| | ||| Sbjct 37823 GCCGTGT-TTCTTAATTGACGTTTTAAGTGTATTCCAGTCCCATAAATCTGTTGGAGTTT 37881 Query 68906 CATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGAT-CCATTATATGTTTCA 68964 |||||| | || || |||| ||| || ||||| | | | | || | ||||||||| Sbjct 37882 TATTCCACATGTCATACTGTAAAATACCTTTACTCAC-TGGGCTGCCTTCATATGTTTCG 37940 Query 68965 TAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTT 69024 || || | | || || || || ||||||||||| | || || |||| ||||| Sbjct 37941 TAGTAGCCATGTTCTTGTGCGAGCTCGCAACTTGCCTCGAGCGCTCCAAAATATATTGTC 38000 Query 69025 TCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGA 69084 |||||||||| || || ||| ||| || || ||| | ||||| | | | Sbjct 38001 TCGAAAATCTGCTGGTTTAGAAGAGATGCCTCATCGCTTTCGTAAGGATACCGCATTAAG 38060 Query 69085 ATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAA 69144 || | |||||| || || |||||||| ||||| || ||||| | || || || || Sbjct 38061 ATCAGTGCATCGGCAAAGCCCTGAACACCAATTCCAATAGGACGGTGCCTTAAGTTCGAT 38120 Query 69145 CTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT-AAGATTTCGGAC 69203 ||| ||| ||||| | ||||||| | || ||||| || ||||| || ||| ||| | Sbjct 38121 TTTTTAGCCTCTGGTAGAGGATAAAAGTTGATATCAATTATTTTGTTCAAGTTTTTTG-T 38179 Query 69204 TACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATC---TATAACAAA 69260 || | || || || || | ||| ||| || || | || | ||||| Sbjct 38180 AACAATCTTTGTTACATCTTTCAATTTTTTAAAGTCGTATTTTTTTTCGGGAGTGACAAA 38239 Query 69261 CATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTG 69320 |||||| || |||| || |||| || ||||| || | |||| || | ||| | Sbjct 38240 CATATTGAGGGCTATGGAAGCTAAGTTGCAAACAGCAATTTCATCAGGGGCGGAATACTC 38299 Query 69321 TATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTT 69380 | || || ||||||| ||| || ||||| || || || | ||||| |||||||| || Sbjct 38300 CACAATTTCGGTACATAAATTGCTGCATTTAATGGTTCCAACGTTTTGTTGATTACTTTT 38359 Query 69381 TTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGAT 69440 ||||||| || ||| | || ||| | |||||||||||||| | ||||| || || Sbjct 38360 GCGATTACAGGAATCTTTGAACAGCATATATGGAGTACCAGTTTCTACTTGAGACTCAAT 38419 Query 69441 AATAGATTTCCAAACGACCCT-AGCATTTATTACGGTC--TTGTAACGCTTCTCTTTTTC 69497 |||| ||| | || | || || ||| | || || ||| || | ||| Sbjct 38420 TATAGCAAACCACA-GAGATTGCGCTTTAATT--GTTCGATTAGCACGGCCTTCCTGTTC 38476 Query 69498 ATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTC 69557 ||||| ||| || || || || |||||||||||||||| || |||||||||| Sbjct 38477 ATATTTGACATAGAGTTTATCAAACTCTTCTCCCCAAACATCATGTAAGCCAGGACATTT 38536 Query 69558 ATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGG 69617 || ||| |||||||||||||| | |||| | | | ||| || |||||||| ||||| || Sbjct 38537 ATGTGGGCACATCAATGACCAATCCTCATTAGCTTCAACACGCTTCATAAAAAGATCTGG 38596 Query 69618 AATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttt 69676 ||||| | ||| ||| || ||||||| || | |||||| || || || || ||||||| Sbjct 38597 TATCCATAAAGC-ATAGAAAAGATCTCGGGCACGATTTTCCTCCTTGCCAGTGTTTTTTT 38655 Query 69677 tAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTC 69736 | | || | ||| || | | || |||||||| ||||||| ||| || || | | | | Sbjct 38656 TTAAGTCTAAAAATTCAAACACGTCTGAATGCCAAGGTTCTAAATAAATTGCAAAGGCAC 38715 Query 69737 CCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCA 69796 | || || || |||||||| || | || | || ||| ||| | ||||| |||| Sbjct 38716 CAGGACGCTTTCCACCTCCCTGGTCAACATAGCGAGCCACGTTGTTAAAAACTCTTAGCA 38775 Query 69797 TCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAA 69856 | || | | |||||| || | ||||| |||||| | || || | ||| | || |||| Sbjct 38776 TTGGCACCAAACCATTTGAAGTTCCATTAGTTCCACAGATCGAAGTACCTTTAGCACGAA 38835 Query 69857 TATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCA 69916 | || || || ||||| || || ||| || || | || || ||| | Sbjct 38836 TGCAGTGAACGTTTATCCCGATTCCACCAGCTGATTTGGATATCATTGCGCATTGTTCGA 38895 Query 69917 ATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACA 69976 | | | |||| || || || |||| | | ||| ||||||||||||| |||| Sbjct 38896 CGGATTTAAATATTCCTTCAATTGAATCAGCCACCATCGTAAGAAGAAAACACGACGACA 38955 Query 69977 TTT---GATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATT 70033 || | ||| | ||| | |||| || | ||| || || || || ||||| || Sbjct 38956 GTTGCGGCCGATTTGTAGCTGCCGC---GAAAAGTGTTGGCGAAGCATGGGTGAAATATC 39012 Query 70034 TTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTA 70093 || ||||||| ||||| ||||||| || | || ||||| ||| ||||| | Sbjct 39013 GCTCGGAAAGCAAGTTGTACGTTTCAACTGCCGCATCGATATCTTCGCCATGTATTCCAA 39072 Query 70094 TCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACA 70153 | || |||||||| ||||||||||| || ||||| | |||| |||||| ||||| | Sbjct 39073 TGGCCACACGCATTAACATATGCTGTGGGCGTTCAGCAATTTTCCCATTTATCTTCAATA 39132 Query 70154 GGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAA 70213 ||||| ||| || |||||||| ||||||||||||||| |||||| | || |||| Sbjct 39133 AATATGAACGTTCAAGCGTTTTAAATCCAAAATAGTTGTATCCAAAGTCCCGATCATAAA 39192 Query 70214 TAATAACAGAATTTA 70228 | ||| | || |||| Sbjct 39193 TTATAGCTGAGTTTA 39207 >seq13173 Length=15772 Score = 190 bits (210), Expect = 3e-43 Identities = 469/705 (67%), Gaps = 11/705 (2%) Strand=Plus/Minus Query 39451 ATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAAC 39510 ||| || |||||||| |||||| ||||| || |||||||| || || | || || Sbjct 14610 ATCGGCGACAAATTCAATGTATTCAGACATCAGTTTGCAATTCATGCCAATTAAGTTTAC 14551 Query 39511 TGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT--CGAT 39568 || | ||| || || || ||||| | ||||||| |||| || |||| || || | || Sbjct 14550 GGGCAAAGCGTCTGTGAGGAACTCCTGTTCGATGACTACAGCATCTGAAATGATTTCAAT 14491 Query 39569 GTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCA-GGCGAAGTC 39627 | | ||| ||| || | || | | ||| | ||||| | ||| ||| || || Sbjct 14490 AATGCGT--TCACGACTGGGACGTTGAACCAGATGCTGGAACATCA-GCACGGCAAAATC 14434 Query 39628 ACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAG 39687 |||||||| ||||| || | |||||| || || || || || || || ||||| || Sbjct 14433 GCAATGTAGACCCTCGTCGCGTGAAATTAACTCATTTGAGAAGGTAAGACCGGGCATAAG 14374 Query 39688 ACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTAC 39747 ||| ||||| || | |||||| || | ||| || ||| ||||||||||||||| || Sbjct 14373 ACCGCGCTTCTTCAACCAAAAGATTGAAGCGAAGCTGCCACTAAAGAAGATGCCTTCGAC 14314 Query 39748 TGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATG----TATCCACTTCT 39803 || ||||| || | || | || || || ||| | | | || ||||| Sbjct 14313 GGCGGCAAAAGCTATAATGCGTTCACC-AAAATTGGCTGACTTTGAAGAAATCCAAGCGA 14255 Query 39804 GTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863 | ||||| || || || |||||| ||||| || || || ||||| || ||||| | Sbjct 14254 GGGCCCAGTCCGCCTTGCGCTTTACTGCTGGCATAGTCTCAATCGCATTGAAAAGATAGT 14195 Query 39864 GTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGA 39923 || || | ||| | ||| || || || | | || |||||||| ||||| | Sbjct 14194 CGCGTTGATGAGGATCACGTATATAGGTGTCGATAAGTACGCTGTACATTTCCGAATGCA 14135 Query 39924 TGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTG 39983 ||| || || || || || || || |||||||| | ||| || || || || ||||| Sbjct 14134 CGTTCTCCATGGCAATTTGGAAGCCATAAAAACAACGTGCCTCGGTTATCTGCACCTCCT 14075 Query 39984 AACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043 | ||| | ||| ||| |||||| || || || ||||| ||||| || ||||||| Sbjct 14074 GGCTAAAGCGTTCTACCAGATTTTCGTTGACAATGCCATCTGATGCGGCGAAGAATGCCA 14015 Query 40044 ATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTT 40103 | ||||| ||||| | |||| | |||| |||||| || | || || | Sbjct 14014 ACACATGAGATATAAAGTGACGCTCATTGTCAGTCAGGCGATTCCAATCTGTCATGTCCT 13955 Query 40104 TTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 | || | ||| || ||||| | ||||| || || || || |||| Sbjct 13954 TGGACAGATCCACCTCTTCGACCGTCCAGAAAGATGCTTCGGCCT 13910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686615146488000