Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq13173 176 4e-39 seq14180 149 5e-31 seq3850 140 3e-28 >seq13173 Length=15772 Score = 176 bits (194), Expect = 4e-39 Identities = 310/447 (69%), Gaps = 5/447 (1%) Strand=Plus/Plus Query 43835 CATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAAT 43894 || ||||||||| || ||||| || || || || || || || ||||| |||||| Sbjct 13996 CACTTTATATCTCATGTGTTGGCATTCTTCGCCGCATCAGATGGCATTGTCAACGAAAAT 14055 Query 43895 TTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTT 43954 |||| || ||| || || || || || | || ||||| ||||||||||| || Sbjct 14056 CTGGTAGAACGCTTTAGCCAGGAGGTGCAGATAACCGAGGCACGTTGTTTTTATGGCTTC 14115 Query 43955 CAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATC 44014 ||||||||||| || || | ||||||||||||||||| | || || || || || || Sbjct 14116 CAAATTGCCATGGAGAACGTGCATTCGGAAATGTACAGCGTACTTATCGACACCTATATA 14175 Query 44015 AAAGATGGGCACGAGAAGCATCGAT-TGTTTAATGCGATAGAAACAGTACCTGCGATTAA 44073 ||| || | | || | || | || |||||||| || || | || || | || Sbjct 14176 CGTGATCCTCATCA-ACGCGACTATCTTTTCAATGCGATTGAGACTATGCCAGCAGTAAA 14234 Query 44074 ACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAA-TGATTC--TTTTGGAGAACG 44130 | || || ||||||||||| ||||| |||||| | | | |||||| ||||| Sbjct 14235 GCGCAAGGCGGACTGGGCCCTCGCTTGGATTTCTTCAAAGTCAGCCAATTTTGGTGAACG 14294 Query 44131 ACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATT 44190 || | || ||||| | || |||||||| |||||| || || || | || || Sbjct 14295 CATTATAGCTTTTGCCGCCGTCGAAGGCATCTTCTTTAGTGGCAGCTTCGCTTCAATCTT 14354 Query 44191 TTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCG 44250 |||||| ||||| || ||| | ||||| || | || || |||||||||||||| || Sbjct 14355 TTGGTTGAAGAAGCGCGGTCTTATGCCCGGTCTTACCTTCTCAAATGAGTTAATTTCACG 14414 Query 44251 TGATGAAGGCTTACATTGCGATTTTGC 44277 || || || |||||||||||||||| Sbjct 14415 CGACGAGGGTCTACATTGCGATTTTGC 14441 >seq14180 Length=47354 Score = 149 bits (164), Expect = 5e-31 Identities = 349/520 (67%), Gaps = 14/520 (3%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || |||||||| ||||| || |||| | | |||||||| ||| ||||||| | || Sbjct 27650 CCGAAAATTGTGAATGGACCCCAAATTCTGGACAAATATGTGGGTGAATCGGAGGCGAAC 27591 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 | || || | ||||| || || || || || |||| ||| | || | || ||| Sbjct 27590 ATTCGCCGGCTATTTGCCGATGCCGAGGAGGAGGAAAAGCGTCTTGGACCGAACAGTGGG 27531 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGG---T 19605 ||||||| || || | |||||| | || || || || || | || |||| | Sbjct 27530 CTGCACATAATCATCTTTGATGAAATCGATGCGATTTGCAAAGCGCGTGGATCTGTAGCT 27471 Query 19606 GTAAA---TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | ||| ||| || || ||||| ||||||||||| || ||| | || | ||||| || Sbjct 27470 GGAAACAGTGGCGTCCACGACACCGTTGTCAATCAGCTGCTGGCGAAGATCGACGGCGTG 27411 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGAC-AG 19721 | || ||||| || ||| | || ||||||||||| ||| | ||| | || ||| || Sbjct 27410 GAGCAGCTGAACAACATTCTGGTCATTGGCATGACCAATCGCAGGGACATGATCGACGAG 27351 Query 19722 CGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATG 19781 |||||| ||||| ||||||||||| | |||| || || | | | || |||| Sbjct 27350 GCCCTTATG-CGACCGGGTCGGTTGGAGGTGCAGATGGAGATCAGCCTGCCTAATGAGCA 27292 Query 19782 TGGACGTGTGGAAATTTTAAACATACATACATCAACCAT--GCGAC-AAAATAACCTTTT 19838 ||||| || | ||| | || ||||| ||| | ||| ||||| ||||| | Sbjct 27291 GGGACGCGTCCAGATTCTCAATATACACACAAAACGCATGCGCGACTTCAATAAAATCGC 27232 Query 19839 AAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGA 19898 | | ||||| ||| | ||||||||| || || || |||| |||||| || || Sbjct 27231 A---GGAGATGTCGATAATAAGGAAATTGCATCGATCACTAAGAACTTTAGCGGTGCGGA 27175 Query 19899 ACTTGAGGGATTAGTGAGGGCCGCCCAATCAATTGCAATG 19938 ||| ||||| || || | || || ||||| | ||| ||| Sbjct 27174 ACTCGAGGGTTTGGTACGTGCGGCACAATCCACTGCCATG 27135 >seq3850 Length=7660 Score = 140 bits (154), Expect = 3e-28 Identities = 264/389 (68%), Gaps = 6/389 (2%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| |||||||| ||||| | || | |||| ||||| || |||| || | ||| Sbjct 5962 CCCAAGATTGTAAACGGTCCGCAGATTCTGGATAAGTATGTGGGCGAATCAGAGGCCAAT 6021 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 ||||||||| ||||||| ||||| ||||| ||| |||||||| | || | ||| ||| Sbjct 6022 GTACGACGTCTGTTTGCCGACGCCGAAGAGGAAGAAAAACGTCTGGGCCCCAACAGTGGC 6081 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTG-- 19606 |||| || || || | || ||| | || || || || ||||| | || || | || Sbjct 6082 CTGCATATCATTATTTTCGACGAAATCGATGCCATTTGCAAGCAGCGCGGCTCCGTTGCC 6141 Query 19607 ----TAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | ||| || || ||||| || |||||||| || || | || | || || || Sbjct 6142 GGCAACAGTGGTGTCCACGACACGGTCGTCAATCAGCTGCTAACTAAGATCGATGGCGTC 6201 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | || || || |||||| | || ||||||||||| ||| | | ||| | || ||| | Sbjct 6202 GATCAGCTAAACAATATTCTGGTCATTGGCATGACCAATCGTCGGGACATGATCGACGAC 6261 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 || || | || ||||| || | ||| | | || || || | ||| ||| | || Sbjct 6262 GCGTTGCTTCGTCCCGGCCGTCTAGAAGTGCAAATGGAGATCAGCTTGCCCAACGAGCAG 6321 Query 19783 GGACGTGTGGAAATTTTAAACATACATAC 19811 || |||||| | || | ||||| || || Sbjct 6322 GGTCGTGTGCAGATCCTTAACATTCACAC 6350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397290335371000