Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq20705 210 2e-49
>seq20705
Length=54059
Score = 210 bits (232), Expect = 2e-49
Identities = 1005/1577 (64%), Gaps = 33/1577 (2%)
Strand=Plus/Plus
Query 130399 GCCACTGTTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATA 130458
|| ||| || || || || || ||||| || || | || || || || ||||| |||||
Sbjct 37331 GCGACTTTTGTCAACAGTAAACTGAATAGCGTTTGCAGCAGGTTTTGTTCGCAAGTAATA 37390
Query 130459 CATGCCTGTTTTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCACATTGTTTGGTA 130518
||| |||||||| || ||| || | ||| || || || | || ||
Sbjct 37391 CATTCCTGTTTTAAGCCCAGCCTTCCATGAGTAAAAATGTATCGAAGTCAGTTTTCCATA 37450
Query 130519 ATTGGGTTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTC 130578
||||| | |||||| || || | || || |||||| |||||||| ||||| ||
Sbjct 37451 GTTGGGCTCTGCCACGTGAATATTAAAGGACTGACTTTGATCTATAAAAGCACCCCTATC 37510
Query 130579 TGCAGCCATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCT 130638
|||||||| | | | | |||| || ||||| |||||||||| | || |
Sbjct 37511 AGCAGCCATTTTTATTGTTGATTTAACGGAGATTTCCCATACGGTCTTGTACAAGTCTCG 37570
Query 130639 AATGTGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTT 130698
| ||||| || || |||| ||||| ||| | | | ||| |||| |||
Sbjct 37571 GACGTGTTGAGGAATAGAATCAATGTTTTGAATAGAACCACGGCTTGATATTATTTGGTT 37630
Query 130699 GCGCATACTTTTATCGTACAA-TCCAAG-CTGTACAAGATCTTTTACCAAATGATTATTA 130756
||| | ||| | | ||||| |||| ||| |||| || | |||| |||
Sbjct 37631 CTTCATGTCGTCATCCCATAGGTCCAATTCTGT-CAA-ATCTCGTAGTAGGTGATGATTT 37688
Query 130757 ATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCA 130816
| | ||| || ||||||| | || ||||| |||||| || ||| |||| ||
Sbjct 37689 ACTACTTGGAATTCACCAGATAACACCCGTCTGGTGTAAATATTAGATGTGTACGGCTCG 37748
Query 130817 AAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAAT 130876
|||||||| || || || | |||||| || || | ||| || ||||| ||| | |
Sbjct 37749 AAGGATTCATTATTACCCATTATTTGGGCAGTGGATGCTGTAGGCATTGGTGCAATAAGC 37808
Query 130877 AGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTC-ATCCCAATCCCATAG 130935
| |||||| |||| ||||| || | ||| || || || | || ||| |||||||
Sbjct 37809 AAAGAATTGCGAACGCCGTGTTTCTTAATTGA-CGTTTTAAGTGTATTCCAGTCCCATAA 37867
Query 130936 AGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACT 130995
| || || | || |||||||| ||| | |||| || |||||||| | || ||
Sbjct 37868 ATCTGTTGGAGTT---TTATTCCACATGTCATACTGTAAAATACCTTTACTCACTGGGCT 37924
Query 130996 GGATTCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGC 131055
| ||| | | ||||||| || | | | || || ||| || || || | ||
Sbjct 37925 GCCTTCATATGTTTCGTAGTAGCCATGTTCTTGTGCGAGCTCGCAACTTGCCTCGAGCGC 37984
Query 131056 TCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTA 131115
||| |||| || || ||| ||| || | |||| | || | | ||| |||||
Sbjct 37985 TCCAAAATATATTGTCTCGAAAATCTGCTGGTTTAGAAGAGATGCCTCATCGCTTTCGTA 38044
Query 131116 AGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCT 131175
|||| | |||||| || | || || || | ||||| | |||| || | || |
Sbjct 38045 AGGATACCGCATTAAGATCAGTGCATCGGCAAAGCCCTGAACACCAATTCCAATAGGACG 38104
Query 131176 ATGTTTTAAATTACATTTACGCGAACATTCGGTGG--GATAAAGGTTAATGTCAATTATT 131233
|| |||| || |||| | | | ||| | |||||| ||| || |||||||||
Sbjct 38105 GTGCCTTAAGTTCGATTTTTTAG--CCTCTGGTAGAGGATAAAAGTTGATATCAATTATT 38162
Query 131234 TTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTG 131293
||||| || || ||||| | ||| || ||||||||| | || || | |
Sbjct 38163 TTGTTCAAGTTTTTTGTAACAATCTTTGTTACATCTTTCAATTTTTTAAAGTCGTATTTT 38222
Query 131294 CCAGTTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTT 131353
||||| | | ||||| ||| | ||| || || | || ||||| || ||
Sbjct 38223 T---TTTCGGGAGTGACAAACATATTGAGGGCTATGGAAGCTAAGTTGCAAACAGCAATT 38279
Query 131354 TCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCC 131413
|| ||| || |||||| |||||||||| || ||||| |||| || ||||| ||
Sbjct 38280 TCATCAGGGGCGGAATACTCCACAATTTCGGTACATAAATTGCTGCATTTAATGGTTCCA 38339
Query 131414 AAATTTTGTTGATTGCTTTTAGCATTCACATG-GTCCTTGTACATCATGTAGGGCGTGCC 131472
| ||||||||||| ||||| || | ||| | || ||| ||| ||| || || || ||
Sbjct 38340 ACGTTTTGTTGATTACTTTT-GCGATTACAGGAATCTTTGAACAGCATATATGGAGTACC 38398
Query 131473 CGTTTCGACTTGAGTTTCAATAAT--GTATCGAAAGAGTTTTCGAGCAGACAATTGAT-- 131528
||||| ||||||| ||||| || | | | |||| || || ||||| |
Sbjct 38399 AGTTTCTACTTGAGACTCAATTATAGCAAACCACAGAGATTGCG---CTTTAATTGTTCG 38455
Query 131529 ATTTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAA--GTTTTGGCCAAA 131586
||| | | |||| | ||| || || | || | | ||||| || | |||||
Sbjct 38456 ATTAGCA-CGGCCTTCCTGTTCATATTTGACATAGAGTTTATCAAACTCTTCTCCCCAAA 38514
Query 131587 CGAACTGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTC 131646
| ||| || ||||||| || ||||| | ||||| | | || |||
Sbjct 38515 CATCATGT--AAGCCAGGACATTTATGTGGGCACATCAATGACCAATCCTCATTAGCTTC 38572
Query 131647 AACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTT 131706
||| ||||||||||| | ||| || | |||||| || || || ||||||| || ||
Sbjct 38573 AACACGCTTCATAAAAAGATCTGGTATCCATAAAGCATAGAAAAGATCTCGGGCACGATT 38632
Query 131707 CTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGG 131766
|| || | || | ||||||| || | |||||| || || | ||| | |||||| ||
Sbjct 38633 TTCCTCCTTGCCAGTGTTTTTTTTTAAGTCTAAAAATTCAAACACGTCTGAATGCCAAGG 38692
Query 131767 TTCCAAATACACTGCCATTGCGCCTTTGCGCTT---ACCGCCTTGATTAACATGACGAAC 131823
||| ||||| | ||| | || || ||||| ||| || || | ||||| ||| |
Sbjct 38693 TTCTAAATAAATTGCAAAGGCACCAGGACGCTTTCCACCTCCCTGGTCAACATAGCGAGC 38752
Query 131824 CATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTT 131883
|| |||||| | || | | ||| ||| ||||||| || | ||||||| || |
Sbjct 38753 CACGTTGTTAAAAACTCTTAGCATTGGCACCAAACCATTTGAAGTTCCATTAGTTCCACA 38812
Query 131884 AATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTT 131943
|| | | || || || | || ||||||||| | || || || || | ||||
Sbjct 38813 GATCGAAGTACCTTTAGCACGAATGCAGTGAACGTTTATCCCGATTCCACCAGCTGATTT 38872
Query 131944 AGAGATTAGTGCGCATT 131960
|| || | ||||||||
Sbjct 38873 GGATATCATTGCGCATT 38889
Score = 98.7 bits (108), Expect = 8e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||| || || ||||| ||||||||||| ||||||||| || |||| | |||||
Sbjct 6878 ACCAAGTGCAATGTAGACTCTTTTTGAATGTTGTAGTCGGACAGAGTGCGACCATCTTCC 6937
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
| ||||| || || | || ||||| |||||||| || || | |||||||| ||
Sbjct 6938 AATTGTTTGCCAGCAAAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCCTGA 6997
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|||||| ||| | |||| | || || | | ||| || || || || || | |||
Sbjct 6998 ATCTTGGCTTTGACATTTTCGATTGTATCCGAAGGTTCGACCTCAAGGGTGATGGTCTTG 7057
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
||||| || || || || || || |||||
Sbjct 7058 CCCGTTAGGGTCTTAACGAAAATCTGCAT 7086
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424757282030400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |