Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq20705 210 2e-49 >seq20705 Length=54059 Score = 210 bits (232), Expect = 2e-49 Identities = 1005/1577 (64%), Gaps = 33/1577 (2%) Strand=Plus/Plus Query 130399 GCCACTGTTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATA 130458 || ||| || || || || || ||||| || || | || || || || ||||| ||||| Sbjct 37331 GCGACTTTTGTCAACAGTAAACTGAATAGCGTTTGCAGCAGGTTTTGTTCGCAAGTAATA 37390 Query 130459 CATGCCTGTTTTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCACATTGTTTGGTA 130518 ||| |||||||| || ||| || | ||| || || || | || || Sbjct 37391 CATTCCTGTTTTAAGCCCAGCCTTCCATGAGTAAAAATGTATCGAAGTCAGTTTTCCATA 37450 Query 130519 ATTGGGTTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTC 130578 ||||| | |||||| || || | || || |||||| |||||||| ||||| || Sbjct 37451 GTTGGGCTCTGCCACGTGAATATTAAAGGACTGACTTTGATCTATAAAAGCACCCCTATC 37510 Query 130579 TGCAGCCATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCT 130638 |||||||| | | | | |||| || ||||| |||||||||| | || | Sbjct 37511 AGCAGCCATTTTTATTGTTGATTTAACGGAGATTTCCCATACGGTCTTGTACAAGTCTCG 37570 Query 130639 AATGTGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTT 130698 | ||||| || || |||| ||||| ||| | | | ||| |||| ||| Sbjct 37571 GACGTGTTGAGGAATAGAATCAATGTTTTGAATAGAACCACGGCTTGATATTATTTGGTT 37630 Query 130699 GCGCATACTTTTATCGTACAA-TCCAAG-CTGTACAAGATCTTTTACCAAATGATTATTA 130756 ||| | ||| | | ||||| |||| ||| |||| || | |||| ||| Sbjct 37631 CTTCATGTCGTCATCCCATAGGTCCAATTCTGT-CAA-ATCTCGTAGTAGGTGATGATTT 37688 Query 130757 ATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCA 130816 | | ||| || ||||||| | || ||||| |||||| || ||| |||| || Sbjct 37689 ACTACTTGGAATTCACCAGATAACACCCGTCTGGTGTAAATATTAGATGTGTACGGCTCG 37748 Query 130817 AAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAAT 130876 |||||||| || || || | |||||| || || | ||| || ||||| ||| | | Sbjct 37749 AAGGATTCATTATTACCCATTATTTGGGCAGTGGATGCTGTAGGCATTGGTGCAATAAGC 37808 Query 130877 AGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTC-ATCCCAATCCCATAG 130935 | |||||| |||| ||||| || | ||| || || || | || ||| ||||||| Sbjct 37809 AAAGAATTGCGAACGCCGTGTTTCTTAATTGA-CGTTTTAAGTGTATTCCAGTCCCATAA 37867 Query 130936 AGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACT 130995 | || || | || |||||||| ||| | |||| || |||||||| | || || Sbjct 37868 ATCTGTTGGAGTT---TTATTCCACATGTCATACTGTAAAATACCTTTACTCACTGGGCT 37924 Query 130996 GGATTCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGC 131055 | ||| | | ||||||| || | | | || || ||| || || || | || Sbjct 37925 GCCTTCATATGTTTCGTAGTAGCCATGTTCTTGTGCGAGCTCGCAACTTGCCTCGAGCGC 37984 Query 131056 TCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTA 131115 ||| |||| || || ||| ||| || | |||| | || | | ||| ||||| Sbjct 37985 TCCAAAATATATTGTCTCGAAAATCTGCTGGTTTAGAAGAGATGCCTCATCGCTTTCGTA 38044 Query 131116 AGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCT 131175 |||| | |||||| || | || || || | ||||| | |||| || | || | Sbjct 38045 AGGATACCGCATTAAGATCAGTGCATCGGCAAAGCCCTGAACACCAATTCCAATAGGACG 38104 Query 131176 ATGTTTTAAATTACATTTACGCGAACATTCGGTGG--GATAAAGGTTAATGTCAATTATT 131233 || |||| || |||| | | | ||| | |||||| ||| || ||||||||| Sbjct 38105 GTGCCTTAAGTTCGATTTTTTAG--CCTCTGGTAGAGGATAAAAGTTGATATCAATTATT 38162 Query 131234 TTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTG 131293 ||||| || || ||||| | ||| || ||||||||| | || || | | Sbjct 38163 TTGTTCAAGTTTTTTGTAACAATCTTTGTTACATCTTTCAATTTTTTAAAGTCGTATTTT 38222 Query 131294 CCAGTTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTT 131353 ||||| | | ||||| ||| | ||| || || | || ||||| || || Sbjct 38223 T---TTTCGGGAGTGACAAACATATTGAGGGCTATGGAAGCTAAGTTGCAAACAGCAATT 38279 Query 131354 TCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCC 131413 || ||| || |||||| |||||||||| || ||||| |||| || ||||| || Sbjct 38280 TCATCAGGGGCGGAATACTCCACAATTTCGGTACATAAATTGCTGCATTTAATGGTTCCA 38339 Query 131414 AAATTTTGTTGATTGCTTTTAGCATTCACATG-GTCCTTGTACATCATGTAGGGCGTGCC 131472 | ||||||||||| ||||| || | ||| | || ||| ||| ||| || || || || Sbjct 38340 ACGTTTTGTTGATTACTTTT-GCGATTACAGGAATCTTTGAACAGCATATATGGAGTACC 38398 Query 131473 CGTTTCGACTTGAGTTTCAATAAT--GTATCGAAAGAGTTTTCGAGCAGACAATTGAT-- 131528 ||||| ||||||| ||||| || | | | |||| || || ||||| | Sbjct 38399 AGTTTCTACTTGAGACTCAATTATAGCAAACCACAGAGATTGCG---CTTTAATTGTTCG 38455 Query 131529 ATTTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAA--GTTTTGGCCAAA 131586 ||| | | |||| | ||| || || | || | | ||||| || | ||||| Sbjct 38456 ATTAGCA-CGGCCTTCCTGTTCATATTTGACATAGAGTTTATCAAACTCTTCTCCCCAAA 38514 Query 131587 CGAACTGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTC 131646 | ||| || ||||||| || ||||| | ||||| | | || ||| Sbjct 38515 CATCATGT--AAGCCAGGACATTTATGTGGGCACATCAATGACCAATCCTCATTAGCTTC 38572 Query 131647 AACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTT 131706 ||| ||||||||||| | ||| || | |||||| || || || ||||||| || || Sbjct 38573 AACACGCTTCATAAAAAGATCTGGTATCCATAAAGCATAGAAAAGATCTCGGGCACGATT 38632 Query 131707 CTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGG 131766 || || | || | ||||||| || | |||||| || || | ||| | |||||| || Sbjct 38633 TTCCTCCTTGCCAGTGTTTTTTTTTAAGTCTAAAAATTCAAACACGTCTGAATGCCAAGG 38692 Query 131767 TTCCAAATACACTGCCATTGCGCCTTTGCGCTT---ACCGCCTTGATTAACATGACGAAC 131823 ||| ||||| | ||| | || || ||||| ||| || || | ||||| ||| | Sbjct 38693 TTCTAAATAAATTGCAAAGGCACCAGGACGCTTTCCACCTCCCTGGTCAACATAGCGAGC 38752 Query 131824 CATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTT 131883 || |||||| | || | | ||| ||| ||||||| || | ||||||| || | Sbjct 38753 CACGTTGTTAAAAACTCTTAGCATTGGCACCAAACCATTTGAAGTTCCATTAGTTCCACA 38812 Query 131884 AATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTT 131943 || | | || || || | || ||||||||| | || || || || | |||| Sbjct 38813 GATCGAAGTACCTTTAGCACGAATGCAGTGAACGTTTATCCCGATTCCACCAGCTGATTT 38872 Query 131944 AGAGATTAGTGCGCATT 131960 || || | |||||||| Sbjct 38873 GGATATCATTGCGCATT 38889 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || || ||||| ||||||||||| ||||||||| || |||| | ||||| Sbjct 6878 ACCAAGTGCAATGTAGACTCTTTTTGAATGTTGTAGTCGGACAGAGTGCGACCATCTTCC 6937 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | ||||| || || | || ||||| |||||||| || || | |||||||| || Sbjct 6938 AATTGTTTGCCAGCAAAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCCTGA 6997 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| ||| | |||| | || || | | ||| || || || || || | ||| Sbjct 6998 ATCTTGGCTTTGACATTTTCGATTGTATCCGAAGGTTCGACCTCAAGGGTGATGGTCTTG 7057 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || || || || || || ||||| Sbjct 7058 CCCGTTAGGGTCTTAACGAAAATCTGCAT 7086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424757282030400