Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq639 105 8e-18
seq13173 86.0 8e-12
>seq639
Length=19670
Score = 105 bits (116), Expect = 8e-18
Identities = 288/435 (66%), Gaps = 16/435 (4%)
Strand=Plus/Minus
Query 181626 CCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAAAG 181685
|| || || || ||||||| |||||||| || ||||| |||| |||||| || || |
Sbjct 1271 CCTGTGCCAATGCCCTCGGCGCCATTCACCAGCACCATGGGTATAGTTGGTATATACCAC 1212
Query 181686 TCTGGTTCAATGGAGCGTCCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAGGA 181745
||| ||||| |||||||||| | ||| | ||| | ||||||||| | |||
Sbjct 1211 AATGGCTCAATCCTCTGTCCATCATCCACTTGGTACTGGAGCAAGGGGTCATCCAGTGGA 1152
Query 181746 TCAAAGATCTTGCGAGCCTCCTT---GGTAAGTTTTG--TGAAGATATACCTCGT--TTG 181798
| | | || ||| | | || || | | | |||| || || | | |||
Sbjct 1151 TTATAAAT-----GAGTCGCGTTAGCGGCGACATCAGGGTGAAAATGTAACGAGCACTTG 1097
Query 181799 AGAAGCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTT 181858
| | |||||||| || || ||||||||||| ||||| | ||||| ||||| ||
Sbjct 1096 CGCAA--TCTTTACCGCCAGCAAGGCGCGTACCAAACTGACCGCGCGGCTCCAGAAGATT 1039
Query 181859 AATGTTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACA 181917
|| ||||| || || | | | |||||| || || || || || | || || |
Sbjct 1038 GATATTGTTGGAGCCCACGAAATTTTGGGCCAAGTTTACAATCGTCATTTG-GAGAGAGA 980
Query 181918 CTTCACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCA 181977
| |||||||| ||||| || ||| | |||||||| | ||| || ||| ||||| || |
Sbjct 979 CCTCACCGTGATGGTAGGCCGACATTTCCGCAACCGAACCCGACAGCTGAGCCACTTTTA 920
Query 181978 TTTCATCTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGA 182037
|||| ||| ||| | |||||| | |||| || || | ||| ||||| |
Sbjct 919 CTTCACGCTTGTCGTTACGCTTGAAGCAGGTGAACATGACCTTGCGCTGGCCGGGCTTTA 860
Query 182038 GACCATCCGCCATAT 182052
|||||||| ||| ||
Sbjct 859 GACCATCCACCAGAT 845
>seq13173
Length=15772
Score = 86.0 bits (94), Expect = 8e-12
Identities = 116/159 (73%), Gaps = 6/159 (4%)
Strand=Plus/Minus
Query 122655 CACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAG 122714
||||||||| || || |||||||| || || ||||| | |||||||||||| ||
Sbjct 14445 CACGGCAAAATCGCAATGTAGACCCTCGTCGCGTGAAATTAACTCATTTGAGAAGGTAAG 14386
Query 122715 ACCTGGCATGAGACCCCGCTTCTTCAACCAATAAAT---AGCGCAGAATGACCCGGAGAA 122771
||| ||||| ||||| ||||||||||||||| | || |||| || || || ||
Sbjct 14385 ACCGGGCATAAGACCGCGCTTCTTCAACCAAAAGATTGAAGCGAAG-CTG--CCACTAAA 14329
Query 122772 GAAGATACCCTCCACACACGCAAACGCAAAAAGGCGTTC 122810
|||||| || || || ||||| || | || ||||||
Sbjct 14328 GAAGATGCCTTCGACGGCGGCAAAAGCTATAATGCGTTC 14290
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627763516320000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |