Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq639 105 8e-18 seq13173 86.0 8e-12 >seq639 Length=19670 Score = 105 bits (116), Expect = 8e-18 Identities = 288/435 (66%), Gaps = 16/435 (4%) Strand=Plus/Minus Query 181626 CCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAAAG 181685 || || || || ||||||| |||||||| || ||||| |||| |||||| || || | Sbjct 1271 CCTGTGCCAATGCCCTCGGCGCCATTCACCAGCACCATGGGTATAGTTGGTATATACCAC 1212 Query 181686 TCTGGTTCAATGGAGCGTCCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAGGA 181745 ||| ||||| |||||||||| | ||| | ||| | ||||||||| | ||| Sbjct 1211 AATGGCTCAATCCTCTGTCCATCATCCACTTGGTACTGGAGCAAGGGGTCATCCAGTGGA 1152 Query 181746 TCAAAGATCTTGCGAGCCTCCTT---GGTAAGTTTTG--TGAAGATATACCTCGT--TTG 181798 | | | || ||| | | || || | | | |||| || || | | ||| Sbjct 1151 TTATAAAT-----GAGTCGCGTTAGCGGCGACATCAGGGTGAAAATGTAACGAGCACTTG 1097 Query 181799 AGAAGCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTT 181858 | | |||||||| || || ||||||||||| ||||| | ||||| ||||| || Sbjct 1096 CGCAA--TCTTTACCGCCAGCAAGGCGCGTACCAAACTGACCGCGCGGCTCCAGAAGATT 1039 Query 181859 AATGTTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACA 181917 || ||||| || || | | | |||||| || || || || || | || || | Sbjct 1038 GATATTGTTGGAGCCCACGAAATTTTGGGCCAAGTTTACAATCGTCATTTG-GAGAGAGA 980 Query 181918 CTTCACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCA 181977 | |||||||| ||||| || ||| | |||||||| | ||| || ||| ||||| || | Sbjct 979 CCTCACCGTGATGGTAGGCCGACATTTCCGCAACCGAACCCGACAGCTGAGCCACTTTTA 920 Query 181978 TTTCATCTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGA 182037 |||| ||| ||| | |||||| | |||| || || | ||| ||||| | Sbjct 919 CTTCACGCTTGTCGTTACGCTTGAAGCAGGTGAACATGACCTTGCGCTGGCCGGGCTTTA 860 Query 182038 GACCATCCGCCATAT 182052 |||||||| ||| || Sbjct 859 GACCATCCACCAGAT 845 >seq13173 Length=15772 Score = 86.0 bits (94), Expect = 8e-12 Identities = 116/159 (73%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 122655 CACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAG 122714 ||||||||| || || |||||||| || || ||||| | |||||||||||| || Sbjct 14445 CACGGCAAAATCGCAATGTAGACCCTCGTCGCGTGAAATTAACTCATTTGAGAAGGTAAG 14386 Query 122715 ACCTGGCATGAGACCCCGCTTCTTCAACCAATAAAT---AGCGCAGAATGACCCGGAGAA 122771 ||| ||||| ||||| ||||||||||||||| | || |||| || || || || Sbjct 14385 ACCGGGCATAAGACCGCGCTTCTTCAACCAAAAGATTGAAGCGAAG-CTG--CCACTAAA 14329 Query 122772 GAAGATACCCTCCACACACGCAAACGCAAAAAGGCGTTC 122810 |||||| || || || ||||| || | || |||||| Sbjct 14328 GAAGATGCCTTCGACGGCGGCAAAAGCTATAATGCGTTC 14290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627763516320000