Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq639 140 4e-28 seq20705 114 2e-20 >seq639 Length=19670 Score = 140 bits (154), Expect = 4e-28 Identities = 197/274 (72%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 168457 ATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATT 168516 ||| ||||| || || ||||||||||||||||| | |||||| |||||||||||||| Sbjct 1092 ATCTTTACCGCCAGCAAGGCGCGTACCAAACTGACCGCGCGGCTCCAGAAGATTGATATT 1033 Query 168517 GTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACC 168576 ||| || |||| | | | | ||||| || |||||||| ||||||||| ||||| Sbjct 1032 GTTGGAGCCCACGAAATTTTGGGCCAAGTTTACAATCGTCATTTGGAGAGAGACCTCACC 973 Query 168577 GTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATC 168636 ||| ||||| || | | || || || | ||| || ||| |||||||| | ||| Sbjct 972 GTGATGGTAGGCCGACATTTCCGCAACCGAACCCGACAGCTGAGCCACTTTTACTTCACG 913 Query 168637 CTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATC 168696 |||| || | |||||| | | |||| |||||||| || ||||| |||||||| Sbjct 912 CTTGTCGTTACGCTTGAAGCAGGTGAACATGACCTTGCGCTGGCCGGGCTTTAGACCATC 853 Query 168697 CGCCATGTGTGCGATAGAACGCTTCA-AGTCCGC 168729 | ||| | || || ||||| |||| |||||| Sbjct 852 CACCAGATTTGGTATGGAACG-TTCATTGTCCGC 820 >seq20705 Length=54059 Score = 114 bits (126), Expect = 2e-20 Identities = 364/561 (65%), Gaps = 5/561 (1%) Strand=Plus/Minus Query 104695 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754 ||| ||||| |||| ||| | ||||| |||||||| || |||||| | ||||| | | Sbjct 38624 CCGAGATCTTTTCTATGCTTTATGGATACCAGATCTTTTTATGAAGCGTGTTGAAGCTAA 38565 Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGA 104814 || ||||||| | | || ||| | || ||||| | |||| ||| || Sbjct 38564 TGAGGATTGGTCATTGATGTGCCCACATAAATGTCCTGGCTTACATGATGTTTGGGGAGA 38505 Query 104815 GGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCC 104874 |||||||| || || || || || | ||||| || || | | || | Sbjct 38504 AGAGTTTGATAAACTCTATGTCAAATATGAACAGGAAGGCCGTGCTAATCGAACAATTAA 38445 Query 104875 AGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACAT 104934 ||| | ||||| ||||| | |||||||| || |||||||| ||||| || Sbjct 38444 AGCGCAATCTCTGTGGTTTGCTATAATTGAGTCTCAAGTAGAAACTGGTACTCCATATAT 38385 Query 104935 GCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAG 104994 ||| | |||||| ||||||| | || ||||||||| | || | || || || | Sbjct 38384 GCTGTTCAAAGATTCCTGTAATCGCAAAAGTAATCAACAAAACGTTGGAACCATTAAATG 38325 Query 104995 TTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAA 105054 |||| | ||||| ||||| |||| | | | | | ||||| | ||||| || || Sbjct 38324 CAGCAATTTATGTACCGAAATTGTGGAGTATTCCGCCCCTGATGAAATTGCTGTTTGCAA 38265 Query 105055 CCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGA 105114 | | || || || || ||| | || ||| ||| || | ||| || || | | | Sbjct 38264 CTTAGCTTCCATAGCCCTCAATATGTTTGTCACTCCCGAAAAAAA---ATACGACTTTAA 38208 Query 105115 AAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAA 105174 |||| | | || || || || | ||| || |||||| | |||| | | ||||||| || Sbjct 38207 AAAATTGAAAGATGTAACAAAGATTGTTACAAAAAACTTGAACAAAATAATTGATATCAA 38148 Query 105175 TTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCG 105233 ||||| || | ||| ||| ||||| || | || |||||||| ||||| | | Sbjct 38147 CTTTTATCCTCTACCAGAG-GCTAAAAAATCGAACTTAAGGCACCGTCCTATTGGAATTG 38089 Query 105234 GTGTTCAGGGTCTCGCGGATG 105254 |||||||||| | || |||| Sbjct 38088 GTGTTCAGGGCTTTGCCGATG 38068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583011456008000