Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq639 140 4e-28
seq20705 114 2e-20
>seq639
Length=19670
Score = 140 bits (154), Expect = 4e-28
Identities = 197/274 (72%), Gaps = 2/274 (1%)
Strand=Plus/Minus
Query 168457 ATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATT 168516
||| ||||| || || ||||||||||||||||| | |||||| ||||||||||||||
Sbjct 1092 ATCTTTACCGCCAGCAAGGCGCGTACCAAACTGACCGCGCGGCTCCAGAAGATTGATATT 1033
Query 168517 GTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACC 168576
||| || |||| | | | | ||||| || |||||||| ||||||||| |||||
Sbjct 1032 GTTGGAGCCCACGAAATTTTGGGCCAAGTTTACAATCGTCATTTGGAGAGAGACCTCACC 973
Query 168577 GTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATC 168636
||| ||||| || | | || || || | ||| || ||| |||||||| | |||
Sbjct 972 GTGATGGTAGGCCGACATTTCCGCAACCGAACCCGACAGCTGAGCCACTTTTACTTCACG 913
Query 168637 CTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATC 168696
|||| || | |||||| | | |||| |||||||| || ||||| ||||||||
Sbjct 912 CTTGTCGTTACGCTTGAAGCAGGTGAACATGACCTTGCGCTGGCCGGGCTTTAGACCATC 853
Query 168697 CGCCATGTGTGCGATAGAACGCTTCA-AGTCCGC 168729
| ||| | || || ||||| |||| ||||||
Sbjct 852 CACCAGATTTGGTATGGAACG-TTCATTGTCCGC 820
>seq20705
Length=54059
Score = 114 bits (126), Expect = 2e-20
Identities = 364/561 (65%), Gaps = 5/561 (1%)
Strand=Plus/Minus
Query 104695 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754
||| ||||| |||| ||| | ||||| |||||||| || |||||| | ||||| | |
Sbjct 38624 CCGAGATCTTTTCTATGCTTTATGGATACCAGATCTTTTTATGAAGCGTGTTGAAGCTAA 38565
Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGA 104814
|| ||||||| | | || ||| | || ||||| | |||| ||| ||
Sbjct 38564 TGAGGATTGGTCATTGATGTGCCCACATAAATGTCCTGGCTTACATGATGTTTGGGGAGA 38505
Query 104815 GGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCC 104874
|||||||| || || || || || | ||||| || || | | || |
Sbjct 38504 AGAGTTTGATAAACTCTATGTCAAATATGAACAGGAAGGCCGTGCTAATCGAACAATTAA 38445
Query 104875 AGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACAT 104934
||| | ||||| ||||| | |||||||| || |||||||| ||||| ||
Sbjct 38444 AGCGCAATCTCTGTGGTTTGCTATAATTGAGTCTCAAGTAGAAACTGGTACTCCATATAT 38385
Query 104935 GCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAG 104994
||| | |||||| ||||||| | || ||||||||| | || | || || || |
Sbjct 38384 GCTGTTCAAAGATTCCTGTAATCGCAAAAGTAATCAACAAAACGTTGGAACCATTAAATG 38325
Query 104995 TTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAA 105054
|||| | ||||| ||||| |||| | | | | | ||||| | ||||| || ||
Sbjct 38324 CAGCAATTTATGTACCGAAATTGTGGAGTATTCCGCCCCTGATGAAATTGCTGTTTGCAA 38265
Query 105055 CCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGA 105114
| | || || || || ||| | || ||| ||| || | ||| || || | | |
Sbjct 38264 CTTAGCTTCCATAGCCCTCAATATGTTTGTCACTCCCGAAAAAAA---ATACGACTTTAA 38208
Query 105115 AAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAA 105174
|||| | | || || || || | ||| || |||||| | |||| | | ||||||| ||
Sbjct 38207 AAAATTGAAAGATGTAACAAAGATTGTTACAAAAAACTTGAACAAAATAATTGATATCAA 38148
Query 105175 TTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCG 105233
||||| || | ||| ||| ||||| || | || |||||||| ||||| | |
Sbjct 38147 CTTTTATCCTCTACCAGAG-GCTAAAAAATCGAACTTAAGGCACCGTCCTATTGGAATTG 38089
Query 105234 GTGTTCAGGGTCTCGCGGATG 105254
|||||||||| | || ||||
Sbjct 38088 GTGTTCAGGGCTTTGCCGATG 38068
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583011456008000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |