Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq639 172 6e-38
seq13173 118 1e-21
>seq639
Length=19670
Score = 172 bits (190), Expect = 6e-38
Identities = 218/300 (73%), Gaps = 0/300 (0%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||||||||||| ||||| ||| || || |||||||| |||||||| || ||
Sbjct 1118 GTGAAAATGTAACGAGCACTTGCGCAATCTTTACCGCCAGCAAGGCGCGTACCAAACTGA 1059
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
|| | |||||||| || || | ||||||| |||||| || ||||| |||||||| |||
Sbjct 1058 CCGCGCGGCTCCAGAAGATTGATATTGTTGGAGCCCACGAAATTTTGGGCCAAGTTTACA 999
Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484
||||| |||||| ||||||| || || || |||| | ||||| || | |||
Sbjct 998 ATCGTCATTTGGAGAGAGACCTCACCGTGATGGTAGGCCGACATTTCCGCAACCGAACCC 939
Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544
| |||||||||||| || | || | | ||| ||||| ||||| | || |||
Sbjct 938 GACAGCTGAGCCACTTTTACTTCACGCTTGTCGTTACGCTTGAAGCAGGTGAACATGACC 879
Query 117545 TTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTCCTCA 117604
|||||||| | ||||| ||||||||| ||| | || || ||||| | ||||| ||
Sbjct 878 TTGCGCTGGCCGGGCTTTAGACCATCCACCAGATTTGGTATGGAACGTTCATTGTCCGCA 819
Score = 120 bits (132), Expect = 3e-22
Identities = 202/289 (70%), Gaps = 4/289 (1%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
||||| ||||| || | || || ||| || || || || || ||||| ||||||||
Sbjct 1118 GTGAAAATGTAACGAGCACTTGCGCAATCTTTACCGCCAGCAAGGCGCGTACCAAACTGA 1059
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
|| ||||| || || |||| ||||||| |||||||||||| || ||||| || |||
Sbjct 1058 CCGCGCGGCTCCAGAAGATTGATATTGTTGGAGCCCACGAAATTTTGGGCCAAGTTTACA 999
Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208
||||| || ||| | |||||||| || || |||| | ||||| | | |||
Sbjct 998 ATCGTCATTTGGAGAGAGACCTCACCGTGATGGTAGGCCGACATTTCCGCAACCGAACCC 939
Query 152209 GCCAACTGCGCCACCTTCATGTC-CG-TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCA 152266
| || ||| ||||| || | || || | ||| ||| ||||| |||| | | || |
Sbjct 938 GACAGCTGAGCCACTTTTACTTCACGCTTGTC--GTTACGCTTGAAGCAGGTGAACATGA 881
Query 152267 CCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACG 152315
||||||||||| || || | ||| ||||||| | || || |||||
Sbjct 880 CCTTGCGCTGGCCGGGCTTTAGACCATCCACCAGATTTGGTATGGAACG 832
>seq13173
Length=15772
Score = 118 bits (130), Expect = 1e-21
Identities = 326/490 (67%), Gaps = 11/490 (2%)
Strand=Plus/Minus
Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843
|| || ||||| || || | ||| || |||||||| || ||||||||||||||||||||
Sbjct 14408 ATTAACTCATTTGAGAAGGTAAGACCGGGCATAAGACCGCGCTTCTTCAACCAAAAGATT 14349
Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903
| | |||| ||||| ||||||||||||||||| ||||| || | || |||||
Sbjct 14348 GAAGCGAAGCTGCCACTAAAGAAGATGCCTTCGACGGCGGCAAAAGCTATAATGCGTTCA 14289
Query 74904 GCGAA---CGGTGCATCGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACC 74960
| || | || | |||| ||||||| | ||||| || || || || || ||
Sbjct 14288 CCAAAATTGGCTGACTTTGAAGAAATCCAAGCGAGGGCCCAGTCCGCCTTGCGCTTTACT 14229
Query 74961 GCAGGGACAGTATCGATCGC-TTG-GAAGAGGCTTGCCTTCTCTTCGGGATC-CTTGACG 75017
|| || | ||| || ||||| ||| |||| | || | | | ||||| | |
Sbjct 14228 GCTGGCATAGTCTCAATCGCATTGAAAAGATAGTCGCGT--TGATGAGGATCACGTATAT 14171
Query 75018 AGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTAC 75077
|| |||| || | | |||| | |||||||| | ||| || ||| |
Sbjct 14170 AG-GTGTCGATAAGTACGCTGTACATTTCCGAATGCACGTTCTCCATGGCAATTTGGAAG 14112
Query 75078 GCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGT-CGATATT 75136
| || ||| | || ||||| | ||||| || ||| | | ||| | | | | |||
Sbjct 14111 CCATAAAAACAACGTGCCTCGGTTATCTGCACCTCC-TGGCTAAAGCGTTCTACCAGATT 14053
Query 75137 CTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCG 75196
|| |||| ||||| || || |||||||| || |||| || |||||||| ||
Sbjct 14052 TTCGTTGACAATGCCATCTGATGCGGCGAAGAATGCCAACACATGAGATATAAAGTGACG 13993
Query 75197 CTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGAC 75256
||||| |||||| || | |||||| ||| |||| | || ||| | ||| |||||
Sbjct 13992 CTCATTGTCAGTCAGGCGATTCCAATCTGTCATGTCCTTGGACAGATCCACCTCTTCGAC 13933
Query 75257 CGTCCAGAAA 75266
||||||||||
Sbjct 13932 CGTCCAGAAA 13923
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546982065160000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |