Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq639 172 6e-38 seq13173 118 1e-21 >seq639 Length=19670 Score = 172 bits (190), Expect = 6e-38 Identities = 218/300 (73%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| ||||| ||| || || |||||||| |||||||| || || Sbjct 1118 GTGAAAATGTAACGAGCACTTGCGCAATCTTTACCGCCAGCAAGGCGCGTACCAAACTGA 1059 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | |||||||| || || | ||||||| |||||| || ||||| |||||||| ||| Sbjct 1058 CCGCGCGGCTCCAGAAGATTGATATTGTTGGAGCCCACGAAATTTTGGGCCAAGTTTACA 999 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 ||||| |||||| ||||||| || || || |||| | ||||| || | ||| Sbjct 998 ATCGTCATTTGGAGAGAGACCTCACCGTGATGGTAGGCCGACATTTCCGCAACCGAACCC 939 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 | |||||||||||| || | || | | ||| ||||| ||||| | || ||| Sbjct 938 GACAGCTGAGCCACTTTTACTTCACGCTTGTCGTTACGCTTGAAGCAGGTGAACATGACC 879 Query 117545 TTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTCCTCA 117604 |||||||| | ||||| ||||||||| ||| | || || ||||| | ||||| || Sbjct 878 TTGCGCTGGCCGGGCTTTAGACCATCCACCAGATTTGGTATGGAACGTTCATTGTCCGCA 819 Score = 120 bits (132), Expect = 3e-22 Identities = 202/289 (70%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| ||||| || | || || ||| || || || || || ||||| |||||||| Sbjct 1118 GTGAAAATGTAACGAGCACTTGCGCAATCTTTACCGCCAGCAAGGCGCGTACCAAACTGA 1059 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||||| || || |||| ||||||| |||||||||||| || ||||| || ||| Sbjct 1058 CCGCGCGGCTCCAGAAGATTGATATTGTTGGAGCCCACGAAATTTTGGGCCAAGTTTACA 999 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 ||||| || ||| | |||||||| || || |||| | ||||| | | ||| Sbjct 998 ATCGTCATTTGGAGAGAGACCTCACCGTGATGGTAGGCCGACATTTCCGCAACCGAACCC 939 Query 152209 GCCAACTGCGCCACCTTCATGTC-CG-TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCA 152266 | || ||| ||||| || | || || | ||| ||| ||||| |||| | | || | Sbjct 938 GACAGCTGAGCCACTTTTACTTCACGCTTGTC--GTTACGCTTGAAGCAGGTGAACATGA 881 Query 152267 CCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACG 152315 ||||||||||| || || | ||| ||||||| | || || ||||| Sbjct 880 CCTTGCGCTGGCCGGGCTTTAGACCATCCACCAGATTTGGTATGGAACG 832 >seq13173 Length=15772 Score = 118 bits (130), Expect = 1e-21 Identities = 326/490 (67%), Gaps = 11/490 (2%) Strand=Plus/Minus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 || || ||||| || || | ||| || |||||||| || |||||||||||||||||||| Sbjct 14408 ATTAACTCATTTGAGAAGGTAAGACCGGGCATAAGACCGCGCTTCTTCAACCAAAAGATT 14349 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 | | |||| ||||| ||||||||||||||||| ||||| || | || ||||| Sbjct 14348 GAAGCGAAGCTGCCACTAAAGAAGATGCCTTCGACGGCGGCAAAAGCTATAATGCGTTCA 14289 Query 74904 GCGAA---CGGTGCATCGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACC 74960 | || | || | |||| ||||||| | ||||| || || || || || || Sbjct 14288 CCAAAATTGGCTGACTTTGAAGAAATCCAAGCGAGGGCCCAGTCCGCCTTGCGCTTTACT 14229 Query 74961 GCAGGGACAGTATCGATCGC-TTG-GAAGAGGCTTGCCTTCTCTTCGGGATC-CTTGACG 75017 || || | ||| || ||||| ||| |||| | || | | | ||||| | | Sbjct 14228 GCTGGCATAGTCTCAATCGCATTGAAAAGATAGTCGCGT--TGATGAGGATCACGTATAT 14171 Query 75018 AGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTAC 75077 || |||| || | | |||| | |||||||| | ||| || ||| | Sbjct 14170 AG-GTGTCGATAAGTACGCTGTACATTTCCGAATGCACGTTCTCCATGGCAATTTGGAAG 14112 Query 75078 GCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGT-CGATATT 75136 | || ||| | || ||||| | ||||| || ||| | | ||| | | | | ||| Sbjct 14111 CCATAAAAACAACGTGCCTCGGTTATCTGCACCTCC-TGGCTAAAGCGTTCTACCAGATT 14053 Query 75137 CTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCG 75196 || |||| ||||| || || |||||||| || |||| || |||||||| || Sbjct 14052 TTCGTTGACAATGCCATCTGATGCGGCGAAGAATGCCAACACATGAGATATAAAGTGACG 13993 Query 75197 CTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGAC 75256 ||||| |||||| || | |||||| ||| |||| | || ||| | ||| ||||| Sbjct 13992 CTCATTGTCAGTCAGGCGATTCCAATCTGTCATGTCCTTGGACAGATCCACCTCTTCGAC 13933 Query 75257 CGTCCAGAAA 75266 |||||||||| Sbjct 13932 CGTCCAGAAA 13923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546982065160000