Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq20705 136 5e-27 seq639 107 2e-18 >seq20705 Length=54059 Score = 136 bits (150), Expect = 5e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 |||||||| || || || ||||| || || |||||||| || || |||||||| || | Sbjct 7089 ATAATGCAGATTTTCGTTAAGACCCTAACGGGCAAGACCATCACCCTTGAGGTCGAACCT 7030 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||| || | |||| | || || || ||||||||||| ||||||||||||||||| Sbjct 7029 TCGGATACAATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGAT 6970 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || || ||||| || |||||||| || ||| | || |||| ||| || || | ||||| Sbjct 6969 CAACAACGTCTGATCTTTGCTGGCAAACAATTGGAAGATGGTCGCACTCTGTCCGACTAC 6910 Query 27583 AATGTCCAAAAGGAATCCAC 27602 || | ||||| || || || Sbjct 6909 AACATTCAAAAAGAGTCTAC 6890 >seq639 Length=19670 Score = 107 bits (118), Expect = 2e-18 Identities = 290/442 (66%), Gaps = 4/442 (1%) Strand=Plus/Plus Query 31963 CGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCC 32022 || ||||| ||| | ||| ||| || || ||||| ||||||||||| || | | || Sbjct 832 CGTTCCATACCAAATCTGGTGGATGGTCTAAAGCCCGGCCAGCGCAAGGTCATGTTCACC 891 Query 32023 TGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCA 32082 ||| ||||| ||| | |||| | || ||||| ||||||||||| | || || Sbjct 892 TGCTTCAAGCGTAACGACAAGCGTGAAGTAAAAGTGGCTCAGCTGTCGGGTTCGGTTGCG 951 Query 32083 GAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCT 32142 || ||||||| || ||||| |||| || ||||| || ||||| ||| | || Sbjct 952 GAAATGTCGGCCTACCATCACGGTGAGGTCTCTCTCCAAATGACGATTGTAAACTTGGCC 1011 Query 32143 CAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACC 32202 || || || || || | || || | || | || ||||| || |||||||| || Sbjct 1012 CAAAATTTCGTGGGCTCCAACAATATCAATCTTCTGGAGCCGCGCGGTCAGTTTGGTACG 1071 Query 32203 CGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCC--GTCTCGCAC 32260 || || || || || || ||| || || | |||||||| ||||||| | |||| Sbjct 1072 CGCCTTGCTGGCGGTAAAGATTGCGCAAGTGCTCGTTACATTTTCACCCTGATGTCGCCG 1131 Query 32261 CTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATG 32320 || ||||| |||| | || ||| || | ||||| ||||| | | |||| Sbjct 1132 CT--AACGCGACTCATTTATAATCCACTGGATGACCCCTTGCTCCAGTACCAAGTGGATG 1189 Query 32321 ACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACG 32380 | || ||| || | ||||| ||| || | || | || ||| | ||||||| | Sbjct 1190 ATGGACAGAGGATTGAGCCATTGTGGTATATACCAACTATACCCATGGTGCTGGTGAATG 1249 Query 32381 GTGCAGAAGGCATCGGAACGGG 32402 | || || ||||| || || || Sbjct 1250 GCGCCGAGGGCATTGGCACAGG 1271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570066592304000