Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq20705 136 5e-27
seq639 107 2e-18
>seq20705
Length=54059
Score = 136 bits (150), Expect = 5e-27
Identities = 150/200 (75%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|||||||| || || || ||||| || || |||||||| || || |||||||| || |
Sbjct 7089 ATAATGCAGATTTTCGTTAAGACCCTAACGGGCAAGACCATCACCCTTGAGGTCGAACCT 7030
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|||| || | |||| | || || || ||||||||||| |||||||||||||||||
Sbjct 7029 TCGGATACAATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGAT 6970
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582
|| || ||||| || |||||||| || ||| | || |||| ||| || || | |||||
Sbjct 6969 CAACAACGTCTGATCTTTGCTGGCAAACAATTGGAAGATGGTCGCACTCTGTCCGACTAC 6910
Query 27583 AATGTCCAAAAGGAATCCAC 27602
|| | ||||| || || ||
Sbjct 6909 AACATTCAAAAAGAGTCTAC 6890
>seq639
Length=19670
Score = 107 bits (118), Expect = 2e-18
Identities = 290/442 (66%), Gaps = 4/442 (1%)
Strand=Plus/Plus
Query 31963 CGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCC 32022
|| ||||| ||| | ||| ||| || || ||||| ||||||||||| || | | ||
Sbjct 832 CGTTCCATACCAAATCTGGTGGATGGTCTAAAGCCCGGCCAGCGCAAGGTCATGTTCACC 891
Query 32023 TGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCA 32082
||| ||||| ||| | |||| | || ||||| ||||||||||| | || ||
Sbjct 892 TGCTTCAAGCGTAACGACAAGCGTGAAGTAAAAGTGGCTCAGCTGTCGGGTTCGGTTGCG 951
Query 32083 GAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCT 32142
|| ||||||| || ||||| |||| || ||||| || ||||| ||| | ||
Sbjct 952 GAAATGTCGGCCTACCATCACGGTGAGGTCTCTCTCCAAATGACGATTGTAAACTTGGCC 1011
Query 32143 CAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACC 32202
|| || || || || | || || | || | || ||||| || |||||||| ||
Sbjct 1012 CAAAATTTCGTGGGCTCCAACAATATCAATCTTCTGGAGCCGCGCGGTCAGTTTGGTACG 1071
Query 32203 CGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCC--GTCTCGCAC 32260
|| || || || || || ||| || || | |||||||| ||||||| | ||||
Sbjct 1072 CGCCTTGCTGGCGGTAAAGATTGCGCAAGTGCTCGTTACATTTTCACCCTGATGTCGCCG 1131
Query 32261 CTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATG 32320
|| ||||| |||| | || ||| || | ||||| ||||| | | ||||
Sbjct 1132 CT--AACGCGACTCATTTATAATCCACTGGATGACCCCTTGCTCCAGTACCAAGTGGATG 1189
Query 32321 ACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACG 32380
| || ||| || | ||||| ||| || | || | || ||| | ||||||| |
Sbjct 1190 ATGGACAGAGGATTGAGCCATTGTGGTATATACCAACTATACCCATGGTGCTGGTGAATG 1249
Query 32381 GTGCAGAAGGCATCGGAACGGG 32402
| || || ||||| || || ||
Sbjct 1250 GCGCCGAGGGCATTGGCACAGG 1271
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570066592304000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |