Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq10079 194 1e-44 seq30232 149 5e-31 seq20705 140 3e-28 >seq10079 Length=19992 Score = 194 bits (214), Expect = 1e-44 Identities = 217/288 (75%), Gaps = 4/288 (1%) Strand=Plus/Minus Query 135474 TGTGGAACGCGGCACAACGGCAGCT--TAAGCGAGAAGGCAAAATGCACGGATTTATGCG 135531 |||||||| | || || |||||| ||| || |||||||||||| |||||| |||| Sbjct 12950 TGTGGAACTCTGCGCAGTTGCAGCTGGTAAAGGA--AGGCAAAATGCATGGATTTCTGCG 12893 Query 135532 CATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACA 135591 ||||||||||| |||||||| ||||||||| | || || || | ||| || || | Sbjct 12892 AATGTATTGGGCCAAAAAGATTTTGGAATGGACCGCCTCACCAGAAGAAGCACTGGAGTT 12833 Query 135592 CGCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGG 135651 ||||||| | || ||| | ||||| || ||||| || ||| | ||||||||||| || Sbjct 12832 TACAATATTGCTAAACGATAAGTACAGCTTGGATGGGCGGGATCCTAATGGCTACGTGGG 12773 Query 135652 TTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGG 135711 ||| |||||||||||| | || || || || ||||| |||||||| || | ||||| Sbjct 12772 TTGCATGTGGTCTATTGGTGGGGTGCATGACCAAGGCTGGAAGGAACGATCTATCTTTGG 12713 Query 135712 CAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGT 135759 ||||| ||||||||||||||| | || || | | | ||||| |||| Sbjct 12712 AAAGATACGCTATATGAACTATCAGGGGTGCAAACGCAAATTCGATGT 12665 Score = 127 bits (140), Expect = 2e-24 Identities = 136/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 135594 CAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGTT 135653 ||||||| | || ||| | ||||| || ||||| || ||| | ||||||||||| |||| Sbjct 12632 CAATATTGCTAAACGATAAGTACAGCTTGGATGGGCGGGATCCTAATGGCTACGTGGGTT 12573 Query 135654 GTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGCA 135713 | |||||||||||| | || || || || ||||| |||||||| || | ||||| | Sbjct 12572 GCATGTGGTCTATTGGTGGGGTGCATGACCAAGGCTGGAAGGAACGATCTATCTTTGGAA 12513 Query 135714 AGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAATTTGTACGTGA 135773 |||| ||||||||||||||| | || || | | | ||||| |||| | | ||| |||| Sbjct 12512 AGATACGCTATATGAACTATCAGGGGTGCAAACGCAAATTCGATGTGACTGCGTATGTGA 12453 >seq30232 Length=15380 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | || ||||| |||||||| || || Sbjct 15330 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTCGAAGTGGAGCCCTCA 15271 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || ||||||||||| |||||||| || || ||||| Sbjct 15270 GATACCATTGAGAATGTTAAGGCCAAGATTCAAGACAAGGAAGGCATTCCCCCAGATCAG 15211 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||| ||||| || |||| ||| | || | ||||| |||||| Sbjct 15210 CAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAAC 15151 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || || |||||||| | ||| | || ||||| || Sbjct 15150 ATCCAGAAGGAGTCCACTTTGCATTTGGTGCTCCGTCTCCGTGGTGGTAT 15101 >seq20705 Length=54059 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || || ||||| || ||||| || Sbjct 7086 ATGCAGATTTTCGTTAAGACCCTAACGGGCAAGACCATCACCCTTGAGGTCGAACCTTCG 7027 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| || ||||| |||||||| || || || || |||||| Sbjct 7026 GATACAATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGATCAA 6967 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || ||||||||||||||||| || || | ||||| |||||| Sbjct 6966 CAACGTCTGATCTTTGCTGGCAAACAATTGGAAGATGGTCGCACTCTGTCCGACTACAAC 6907 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||| ||||| || || || ||||| | || | || ||||| Sbjct 6906 ATTCAAAAAGAGTCTACATTGCACTTGGTGCTCCGCCTCCGTGGTGG 6860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434732472384000