Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq17074 176 4e-39 seq5260 120 3e-22 >seq17074 Length=21176 Score = 176 bits (194), Expect = 4e-39 Identities = 321/466 (69%), Gaps = 8/466 (2%) Strand=Plus/Plus Query 6493 AATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGAT 6552 ||| || || | |||||| || || |||| || | |||||| | || | || | Sbjct 3947 AATGTTTAGTTTGGGGAAGGGACGAGGCTTGCGCTTCAGCTGCTCCTTCAGAGGATCAAC 4006 Query 6553 GTGGTTCAGGTAGATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGGAACCAAC 6610 ||| || | |||| ||| | || ||| |||| |||| | ||| || || || Sbjct 4007 GTGATTGCGATAGACATGGGTGTCGCCCGTGACGT--GCACAAACTCGCCCGGTCGCAGA 4064 Query 6611 CCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACC 6670 ||| ||||| ||||||||| |||||||||| || || ||||||||||| ||||| Sbjct 4065 CCCGTCACATGCGCGATCATGCACGTGAGCAGCGCATAGGATGCAATGTTGAAGGGCACA 4124 Query 6671 CCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACG 6730 || | ||||| || | || ||||||||||||||||| ||||| || | ||| || Sbjct 4125 CCCAGACCCATATCAGCACTGCGCTGATAGAGCTGGCAGGATAGCTCGCCCTGCGCCACA 4184 Query 6731 TAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTC 6790 ||||| ||| || ||||||||| || || |||||| | |||| |||| || ||| Sbjct 4185 TAGAACTGGGCCAGACAGTGGCACGGCGGCAGTGCCATCTGTGGGATATCCGATGGATTC 4244 Query 6791 CACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTAC 6850 |||| | |||| | || | || || | || | | | ||||| || ||| Sbjct 4245 CACGAGGACATGATCATGCGTCGATCGTTCGGATCGTGGCGTATGGTGTGTATGACGCGT 4304 Query 6851 TGCAGCTGGTCCGCTCCCTGTCCCGAATAGTC--CGCTTCGCTCCCCCGATACTCCGCCC 6908 ||||| || || |||||| || |||||||| |||| || || || |||| || | Sbjct 4305 TGCAGTTGATCGACTCCCTCGCCGGAATAGTCGTCGCT--GCAGCCGCGGTACTTGGCGC 4362 Query 6909 CAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTC 6954 ||||||| | |||||| || || || ||||| |||| ||||||||| Sbjct 4363 CAAAGTGACGCCACTGAAAGCCATATACCGGCCCCAGGTCGCCCTC 4408 Score = 176 bits (194), Expect = 4e-39 Identities = 321/466 (69%), Gaps = 8/466 (2%) Strand=Plus/Minus Query 34391 GAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGG 34450 ||||||||| |||| ||||| || || || |||||| | |||||||| || |||| || Sbjct 4408 GAGGGCGACCTGGGGCCGGTATATGGCTTTCAGTGGCGTCACTTTGGCGCCAAGTACCGC 4349 Query 34451 GGGAGCGAAGCG--GACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACA 34508 || || |||| |||||||| || |||||| || || ||||| ||| || ||| Sbjct 4348 GGCTGC--AGCGACGACTATTCCGGCGAGGGAGTCGATCAACTGCAACGCGTCATACACA 4291 Query 34509 CCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATC 34568 || | | | || | || || | || | |||| | ||||||| || |||| Sbjct 4290 CCATACGCCACGATCCGAACGATCGACGCATGATCATGTCCTCGTGGAATCCATCGGATA 4231 Query 34569 TCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGG 34628 |||| | |||||| || || ||||||||| || ||| ||||| || ||| | || | Sbjct 4230 TCCCACAGATGGCACTGCCGCCGTGCCACTGTCTGGCCCAGTTCTATGTGGCGCAGGGCG 4171 Query 34629 AGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACA 34688 |||| ||||||||||||||||| || | || ||||| | || ||||| ||||||| Sbjct 4170 AGCTATCCTGCCAGCTCTATCAGCGCAGTGCTGATATGGGTCTGGGTGTGCCCTTCAACA 4111 Query 34689 TTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGG 34748 |||| || || |||||||||| ||||||||| ||||| ||| || || || | Sbjct 4110 TTGCATCCTATGCGCTGCTCACGTGCATGATCGCGCATGTGACGGGTCTGCGACCGGGCG 4051 Query 34749 AGCTGGTGCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCG 34806 || | |||| |||| ||| || | ||| |||| | || ||| | || | || Sbjct 4050 AGTTTGTGC--ACGTCACGGGCGACACCCATGTCTATCGCAATCACGTTGATCCTCTGAA 3993 Query 34807 GATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATT 34852 | |||||| | || |||| || || |||||| | || || ||| Sbjct 3992 GGAGCAGCTGAAGCGCAAGCCTCGTCCCTTCCCCAAACTAAACATT 3947 >seq5260 Length=19401 Score = 120 bits (132), Expect = 3e-22 Identities = 271/405 (67%), Gaps = 8/405 (2%) Strand=Plus/Plus Query 34394 GGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGG 34453 ||||| ||||| || ||||| || || || ||| | |||||||| || | ||| | Sbjct 11932 GGCGATTTGGGACCCGTCTATGGTTTTCAATGGCGCCACTTTGGCGCACAATATGGCACC 11991 Query 34454 AGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTG 34513 | || | |||||| | || |||| || ||||||| | ||||| |||||| | Sbjct 11992 TGTGACGACGACTATACAGGCAAGGGCATCGATCAGCTGCGTCAGGTGATTGACACCAT- 12050 Query 34514 AAGCGG-AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCC 34572 | || || || || || |||| | |||| || ||||| || | ||| | || Sbjct 12051 ACGCAACAATCCATCAGATCGACGGATTATTATGTCTGCCTGGAATCCAATTGATATACC 12110 Query 34573 TCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAA------TGG 34626 |||||||| || || |||||| | || ||| ||||| || | | ||| Sbjct 12111 AAAAATGGCGCTGCCGCCTTGCCACTGCTTCGCCCAGTTCTATGTGTCCCAGGATCGTGG 12170 Query 34627 GGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAA 34686 ||||||||||| ||| | ||||||||| | |||||||| || || ||||| || || Sbjct 12171 CGAGCTGTCCTGTCAGTTATATCAACGAAGCGCTGACATGGGTTTGGGTGTGCCCTTTAA 12230 Query 34687 CATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGG 34746 |||||| || || ||||||| ||||||||||||||||| || | || || Sbjct 12231 CATTGCCTCGTATGCGTTGCTCACCTACATGATCGCTCATGTGACTGGCCTCAAGCCGGG 12290 Query 34747 GGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCA 34791 || | ||||| || |||| || ||||| | || ||||||| Sbjct 12291 CGACTTTGTGCACACCATGGGAGACACGCATGTGTATTTGAACCA 12335 Score = 120 bits (132), Expect = 3e-22 Identities = 271/405 (67%), Gaps = 8/405 (2%) Strand=Plus/Minus Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613 ||||||| || | ||||| || |||| || ||||| | || || || | || Sbjct 12335 TGGTTCAAATACACATGCGTGTCTCCCATGGTGTGCACAAAGTCGCCCGGCTTGAGGCCA 12276 Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCT 6673 ||||||||||||||||| ||||||| || || |||||||| || ||||| || Sbjct 12275 GTCACATGAGCGATCATGTAGGTGAGCAACGCATACGAGGCAATGTTAAAGGGCACACCC 12216 Query 6674 AACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCA------TTCGCG 6727 || |||||||| | ||||||||| | ||| ||||||||||| ||| | | Sbjct 12215 AAACCCATGTCAGCGCTTCGTTGATATAACTGACAGGACAGCTCGCCACGATCCTGGGAC 12156 Query 6728 ACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGG 6787 || ||||| ||| || | |||||| || || |||||||| || | ||| | || Sbjct 12155 ACATAGAACTGGGCGAAGCAGTGGCAAGGCGGCAGCGCCATTTTTGGTATATCAATTGGA 12096 Query 6788 TTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTT-CCGCTTCAAGGTGTCGATCAC 6846 ||||| || |||| | |||| || || || || || | | |||||| ||||| Sbjct 12095 TTCCAGGCAGACATAATAATCCGTCGATCTGATGGATTGTTGCGT-ATGGTGTCAATCAC 12037 Query 6847 GTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGC 6906 | ||||||| || |||| || | |||||| | || | | ||| | || Sbjct 12036 CTGACGCAGCTGATCGATGCCCTTGCCTGTATAGTCGTCGTCACAGGTGCCATATTGTGC 11977 Query 6907 CCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCC 6951 |||||||| | ||| || || || ||||| || ||||| ||||| Sbjct 11976 GCCAAAGTGGCGCCATTGAAAACCATAGACGGGTCCCAAATCGCC 11932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448070767824000