Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq30232 93.3 3e-14
seq20705 82.4 5e-11
>seq30232
Length=15380
Score = 93.3 bits (102), Expect = 3e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||| ||||| |||| || ||||| || || || || || || || || ||||
Sbjct 15009 GACAAGGAAGGCATTCCCCCAGATCAGCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAG 14950
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|||| ||||| |||||||| ||||||||||| || ||| ||| ||||| ||||| |
Sbjct 14949 GACGGACGCACTTTGTCCGACTACAACATCCAGAAGGAGTCCACATTGCACTTGGTGCTC 14890
Query 28003 CGTTTGCGTGGCGGCG 28018
|||||||| || ||||
Sbjct 14889 CGTTTGCGCGGTGGCG 14874
Score = 89.7 bits (98), Expect = 4e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||| ||||| |||| || ||||| || || || || || || || || ||||
Sbjct 15237 GACAAGGAAGGCATTCCCCCAGATCAGCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAG 15178
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|||| ||||| ||||||| ||||||||||| || ||| ||||||||||||||| |
Sbjct 15177 GACGGACGCACTCTGTCCGACTACAACATCCAGAAGGAGTCCACTTTGCATTTGGTGCTC 15118
Query 28003 CGTTTGCGTGGCGG 28016
||| | ||||| ||
Sbjct 15117 CGTCTCCGTGGTGG 15104
>seq20705
Length=54059
Score = 82.4 bits (90), Expect = 5e-11
Identities = 158/233 (68%), Gaps = 10/233 (4%)
Strand=Plus/Minus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
|||||| ||||| || || || || || || || || || |||| |||||| |
Sbjct 7087 AATGCAGATTTTCGTTAAGACCCTAACGGGCAAGACCATCACCCTTGAGGTCGAACCTTC 7028
Query 27849 CGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903
|| |||||||| |||||| || || |||||||| || ||||
Sbjct 7027 GGA-----TACAATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCA 6973
Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963
|| || ||||| | || ||||| || ||||||||||| || | |||| |||||||
Sbjct 6972 GATCAACAACGTCTGATCTTTGCTGGCAAACAATTGGAAGATGGTCGCACTCTGTCCGAC 6913
Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||||| ||||||||| || ||||| ||||| | || | ||||| ||
Sbjct 6912 TACAACATTCAAAAAGAGTCTACATTGCACTTGGTGCTCCGCCTCCGTGGTGG 6860
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355714072103400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |