Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq30232 93.3 3e-14 seq20705 82.4 5e-11 >seq30232 Length=15380 Score = 93.3 bits (102), Expect = 3e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || ||||| || || || || || || || || |||| Sbjct 15009 GACAAGGAAGGCATTCCCCCAGATCAGCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAG 14950 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| |||||||| ||||||||||| || ||| ||| ||||| ||||| | Sbjct 14949 GACGGACGCACTTTGTCCGACTACAACATCCAGAAGGAGTCCACATTGCACTTGGTGCTC 14890 Query 28003 CGTTTGCGTGGCGGCG 28018 |||||||| || |||| Sbjct 14889 CGTTTGCGCGGTGGCG 14874 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || ||||| || || || || || || || || |||| Sbjct 15237 GACAAGGAAGGCATTCCCCCAGATCAGCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAG 15178 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| ||||||| ||||||||||| || ||| ||||||||||||||| | Sbjct 15177 GACGGACGCACTCTGTCCGACTACAACATCCAGAAGGAGTCCACTTTGCATTTGGTGCTC 15118 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 15117 CGTCTCCGTGGTGG 15104 >seq20705 Length=54059 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/233 (68%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| ||||| || || || || || || || || || |||| |||||| | Sbjct 7087 AATGCAGATTTTCGTTAAGACCCTAACGGGCAAGACCATCACCCTTGAGGTCGAACCTTC 7028 Query 27849 CGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 || |||||||| |||||| || || |||||||| || |||| Sbjct 7027 GGA-----TACAATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCA 6973 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || ||||| | || ||||| || ||||||||||| || | |||| ||||||| Sbjct 6972 GATCAACAACGTCTGATCTTTGCTGGCAAACAATTGGAAGATGGTCGCACTCTGTCCGAC 6913 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| ||||||||| || ||||| ||||| | || | ||||| || Sbjct 6912 TACAACATTCAAAAAGAGTCTACATTGCACTTGGTGCTCCGCCTCCGTGGTGG 6860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355714072103400