Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq20705 150 4e-31 seq30232 132 1e-25 >seq20705 Length=54059 Score = 150 bits (166), Expect = 4e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||||||||| ||||| || || | || || | |||||||||| || ||||| Sbjct 6890 GTAGACTCTTTTTGAATGTTGTAGTCGGACAGAGTGCGACCATCTTCCAATTGTTTGCCA 6949 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| || |||||||| || ||||||| ||| || |||||||| ||||| ||| Sbjct 6950 GCAAAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCCTGAATCTTGGCTTTG 7009 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || |||||||| || || || ||| ||||| || ||||| ||||| ||||| || ||| Sbjct 7010 ACATTTTCGATTGTATCCGAAGGTTCGACCTCAAGGGTGATGGTCTTGCCCGTTAGGGTC 7069 Query 211098 TTTACAAACACCTGCATT 211115 || || || | ||||||| Sbjct 7070 TTAACGAAAATCTGCATT 7087 >seq30232 Length=15380 Score = 132 bits (146), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||||||||| || |||||||| || || | || || | ||| || |||||||||||||| Sbjct 15133 AGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTGCC 15192 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 |||||||| | || || || || || |||| ||||||||||| || ||||| || Sbjct 15193 AGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGAATCTTGGCCTT 15252 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 || || || ||||| || ||| || || ||||||||||| ||||| || || | || Sbjct 15253 AACATTCTCAATGGTATCTGAGGGCTCCACTTCGAGAGTGATGGTCTTGCCAGTCAAGGT 15312 Query 211097 CTTTACAAACACCTGCAT 211114 ||| || || | |||||| Sbjct 15313 CTTCACGAAGATCTGCAT 15330 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 |||||||| || |||||||| || || | | || | ||| || |||||||||||||| Sbjct 14906 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGTCCGTCCTCCAGCTGCTTGCCA 14965 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 |||||||| | || || || || || |||| ||||||||||| |||||||| || Sbjct 14966 GCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTA 15025 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || || ||||| || ||| || || ||||||||||| ||||| || || | ||| Sbjct 15026 ACATTCTCAATGGTATCTGAGGGCTCCACTTCGAGAGTGATGGTCTTGCCAGTCAAGGTC 15085 Query 211098 TTTACAAACACCTGCAT 211114 || || || | |||||| Sbjct 15086 TTGACGAAGATCTGCAT 15102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158644074083000