Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq20705 145 5e-30 seq30232 138 8e-28 >seq20705 Length=54059 Score = 145 bits (160), Expect = 5e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||||||||| ||||| ||||| || || ||||| || || || || | | Sbjct 7087 AATGCAGATTTTCGTTAAGACCCTAACGGGCAAGACCATCACCCTTGAGGTCGAACCTTC 7028 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || | |||| | ||| || ||| |||||||| || | || |||||||| Sbjct 7027 GGATACAATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGATCA 6968 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || ||||| ||||||||| ||||||| | |||||| | ||| ||||| Sbjct 6967 ACAACGTCTGATCTTTGCTGGCAAACAATTGGAAGATGGTCGCACTCTGTCCGACTACAA 6908 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| ||||||||||| ||||| || || || Sbjct 6907 CATTCAAAAAGAGTCTACATTGCACTTGGT 6878 >seq30232 Length=15380 Score = 138 bits (152), Expect = 8e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || |||||||||||||| || || | Sbjct 15102 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACTCTCGAAGTGGAGCCCTCA 15043 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| |||| | || | | ||||| ||||| | || |||||||| Sbjct 15042 GATACCATTGAGAATGTTAAGGCCAAGA-TCCAAGACAAGGAAGGCATTCCCCCAGATCA 14984 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || || || ||||| || ||||| |||| ||||||||| ||| ||||| Sbjct 14983 GCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGACGCACTTTGTCCGACTACAA 14924 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || ||||||||||| || || || | | ||||| || || Sbjct 14923 CATCCAGAAGGAGTCCACATTGCACTTGGTGCTCCGTTTGCGCGGTGG 14876 Score = 138 bits (152), Expect = 8e-28 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || |||||||||||||| || || | Sbjct 15330 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTCGAAGTGGAGCCCTCA 15271 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| |||| | || ||| ||||| ||||| | || |||||||| Sbjct 15270 GATACCATTGAGAATGTTAAGGC-CAAGATTCAAGACAAGGAAGGCATTCCCCCAGATCA 15212 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || || || ||||| || ||||| |||| ||||||| | ||| ||||| Sbjct 15211 GCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAA 15152 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || || |||||||| || ||||| || Sbjct 15151 CATCCAGAAGGAGTCCACTTTGCATTTGGT 15122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337868713373600