Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq20705 145 5e-30
seq30232 138 8e-28
>seq20705
Length=54059
Score = 145 bits (160), Expect = 5e-30
Identities = 158/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||||||||||||||| ||||| ||||| || || ||||| || || || || | |
Sbjct 7087 AATGCAGATTTTCGTTAAGACCCTAACGGGCAAGACCATCACCCTTGAGGTCGAACCTTC 7028
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||| || | |||| | ||| || ||| |||||||| || | || ||||||||
Sbjct 7027 GGATACAATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGATCA 6968
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| ||| | || ||||| ||||||||| ||||||| | |||||| | ||| |||||
Sbjct 6967 ACAACGTCTGATCTTTGCTGGCAAACAATTGGAAGATGGTCGCACTCTGTCCGACTACAA 6908
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819
||| ||||||||||| ||||| || || ||
Sbjct 6907 CATTCAAAAAGAGTCTACATTGCACTTGGT 6878
>seq30232
Length=15380
Score = 138 bits (152), Expect = 8e-28
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||| | || || || || |||||||||||||| || || |
Sbjct 15102 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACTCTCGAAGTGGAGCCCTCA 15043
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||| ||| |||| | || | | ||||| ||||| | || ||||||||
Sbjct 15042 GATACCATTGAGAATGTTAAGGCCAAGA-TCCAAGACAAGGAAGGCATTCCCCCAGATCA 14984
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||||| || || || ||||| || ||||| |||| ||||||||| ||| |||||
Sbjct 14983 GCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGACGCACTTTGTCCGACTACAA 14924
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
||| || || ||||||||||| || || || | | ||||| || ||
Sbjct 14923 CATCCAGAAGGAGTCCACATTGCACTTGGTGCTCCGTTTGCGCGGTGG 14876
Score = 138 bits (152), Expect = 8e-28
Identities = 158/210 (75%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||| | || || || || |||||||||||||| || || |
Sbjct 15330 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTCGAAGTGGAGCCCTCA 15271
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||| ||| |||| | || ||| ||||| ||||| | || ||||||||
Sbjct 15270 GATACCATTGAGAATGTTAAGGC-CAAGATTCAAGACAAGGAAGGCATTCCCCCAGATCA 15212
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||||| || || || ||||| || ||||| |||| ||||||| | ||| |||||
Sbjct 15211 GCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAA 15152
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819
||| || || |||||||| || ||||| ||
Sbjct 15151 CATCCAGAAGGAGTCCACTTTGCATTTGGT 15122
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337868713373600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |