Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq30232 143 6e-29 seq20705 114 3e-20 >seq30232 Length=15380 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 ||||| || || |||| ||||| |||| |||||| | || || || |||||||| ||| Sbjct 14906 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGTCCGTCCTCCAGCTGCTTGCCA 14965 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 |||||||| | || || || || || ||||| |||||||||||||||||||| ||| Sbjct 14966 GCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTA 15025 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| || ||||| ||||||| ||||| || | ||||| |||||||| ||||| || Sbjct 15026 ACATTCTCAATGGTATCTGAGGGCTCCACTTCGAGAGTGATGGTCTTGCCAGTCAAGGTC 15085 Query 225697 TTTATGAACACTTGCAT 225713 || | ||| | ||||| Sbjct 15086 TTGACGAAGATCTGCAT 15102 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 |||||| || || |||| ||||| |||| || ||| | || || || |||||||| || Sbjct 15133 AGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTGCC 15192 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 ||||||||| | || || || || || ||||| |||||||||||||| ||||| ||| Sbjct 15193 AGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGAATCTTGGCCTT 15252 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| || ||||| ||||||| ||||| || | ||||| |||||||| ||||| || Sbjct 15253 AACATTCTCAATGGTATCTGAGGGCTCCACTTCGAGAGTGATGGTCTTGCCAGTCAAGGT 15312 Query 225696 TTTTATGAACACTTGCAT 225713 || | ||| | ||||| Sbjct 15313 CTTCACGAAGATCTGCAT 15330 >seq20705 Length=54059 Score = 114 bits (126), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || |||||||| | ||||| |||| || ||| | |||||||| | || || ||| Sbjct 6890 GTAGACTCTTTTTGAATGTTGTAGTCGGACAGAGTGCGACCATCTTCCAATTGTTTGCCA 6949 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| || |||||||| || || ||||| || || ||||| || ||||| || Sbjct 6950 GCAAAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCCTGAATCTTGGCTTTG 7009 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| |||||| || || || | ||| || || | ||||| ||||||||||| | || Sbjct 7010 ACATTTTCGATTGTATCCGAAGGTTCGACCTCAAGGGTGATGGTCTTGCCCGTTAGGGTC 7069 Query 225697 TTTATGAACACTTGCATT 225714 || | ||| | |||||| Sbjct 7070 TTAACGAAAATCTGCATT 7087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192008647734800