Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq20705 91.5 1e-13 >seq20705 Length=54059 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/219 (69%), Gaps = 12/219 (5%) Strand=Plus/Plus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| |||||| || || ||||||||||| ||||| |||| || ||| |||||| Sbjct 6877 CACCAAGTGCAATGTAGACTCTTTTTGAATGTTGTAGTCGGACAGAGTGCGACCATCTTC 6936 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 |||||||||||| ||| | || || | |||||| ||| || | || |||||||| Sbjct 6937 CAATTGTTTGCCAGCAAAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCCTG 6996 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGAC------GGTAAT 101202 ||| || ||| |||| | | || || || | |||||| ||| || Sbjct 6997 AATCTTGGCTTTGACATTTTCGATTGTATC------CGAAGGTTCGACCTCAAGGGTGAT 7050 Query 101203 AGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATTAT 101241 || |||||||| | || |||| ||||| |||||||| Sbjct 7051 GGTCTTGCCCGTTAGGGTCTTAACGAAAATCTGCATTAT 7089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409490048257800