Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq17074 113 4e-20
seq5260 86.0 5e-12
>seq17074
Length=21176
Score = 113 bits (124), Expect = 4e-20
Identities = 193/273 (71%), Gaps = 8/273 (3%)
Strand=Plus/Plus
Query 29606 AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCA 29665
||| |||| ||||| | |||| | || ||||| | |||| || || ||||| |
Sbjct 3954 AGTTTGGGGAAGGGACGAGGCTTGCGCTTCAGCTGCTCCTTCAGAGGATCAACGTGATTG 4013
Query 29666 AGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACG 29725
| ||||| || | || ||| | ||| |||||||| |||||| || || || ||
Sbjct 4014 CGATAGACATGGGTGTCGCCCGTGACGTGCACAAACTCGCCCGGTCGCAGACCCGTCACA 4073
Query 29726 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCC 29785
|| || |||||| ||||||| || | ||| || ||||| |||||||| || || |||
Sbjct 4074 TGCGCGATCATGCACGTGAGCAGCGCATAGGATGCAATGTTGAAGGGCACACCCAGACCC 4133
Query 29786 ATGTC--CCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGT-CGCTCACGTAAAAC 29842
|| || | ||| | ||| ||||||||||| || ||||| || | ||| ||| || |||
Sbjct 4134 ATATCAGCACTG--CGCTGATAGAGCTGGCAGGATAGCTCGCCCTGCGC-CACATAGAAC 4190
Query 29843 TGACACATGGCA-TGGCACGGAGGAAGGGCCAT 29874
|| || | || |||||||| || || |||||
Sbjct 4191 TGGGCCA-GACAGTGGCACGGCGGCAGTGCCAT 4222
>seq5260
Length=19401
Score = 86.0 bits (94), Expect = 5e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 29651 GGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGT 29710
|| ||||| |||| | || || || | ||||||| |||||| ||||| || |||||
Sbjct 12344 GGATCCACATGGTTCAAATACACATGCGTGTCTCCCATGGTGTGCACAAAGTCGCCCGGC 12285
Query 29711 TCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAG 29770
| || || || || ||||| |||||||| ||||| | | || ||| |||||||||
Sbjct 12284 TTGAGGCCAGTCACATGAGCGATCATGTAGGTGAGCAACGCATACGAGGCAATGTTAAAG 12225
Query 29771 GGCACCCCGAGCCCCATGTC 29790
||||| || | ||||||||
Sbjct 12224 GGCACACCCAAACCCATGTC 12205
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405993906101200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |