Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq17074 113 4e-20 seq5260 86.0 5e-12 >seq17074 Length=21176 Score = 113 bits (124), Expect = 4e-20 Identities = 193/273 (71%), Gaps = 8/273 (3%) Strand=Plus/Plus Query 29606 AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCA 29665 ||| |||| ||||| | |||| | || ||||| | |||| || || ||||| | Sbjct 3954 AGTTTGGGGAAGGGACGAGGCTTGCGCTTCAGCTGCTCCTTCAGAGGATCAACGTGATTG 4013 Query 29666 AGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACG 29725 | ||||| || | || ||| | ||| |||||||| |||||| || || || || Sbjct 4014 CGATAGACATGGGTGTCGCCCGTGACGTGCACAAACTCGCCCGGTCGCAGACCCGTCACA 4073 Query 29726 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCC 29785 || || |||||| ||||||| || | ||| || ||||| |||||||| || || ||| Sbjct 4074 TGCGCGATCATGCACGTGAGCAGCGCATAGGATGCAATGTTGAAGGGCACACCCAGACCC 4133 Query 29786 ATGTC--CCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGT-CGCTCACGTAAAAC 29842 || || | ||| | ||| ||||||||||| || ||||| || | ||| ||| || ||| Sbjct 4134 ATATCAGCACTG--CGCTGATAGAGCTGGCAGGATAGCTCGCCCTGCGC-CACATAGAAC 4190 Query 29843 TGACACATGGCA-TGGCACGGAGGAAGGGCCAT 29874 || || | || |||||||| || || ||||| Sbjct 4191 TGGGCCA-GACAGTGGCACGGCGGCAGTGCCAT 4222 >seq5260 Length=19401 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 29651 GGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGT 29710 || ||||| |||| | || || || | ||||||| |||||| ||||| || ||||| Sbjct 12344 GGATCCACATGGTTCAAATACACATGCGTGTCTCCCATGGTGTGCACAAAGTCGCCCGGC 12285 Query 29711 TCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAG 29770 | || || || || ||||| |||||||| ||||| | | || ||| ||||||||| Sbjct 12284 TTGAGGCCAGTCACATGAGCGATCATGTAGGTGAGCAACGCATACGAGGCAATGTTAAAG 12225 Query 29771 GGCACCCCGAGCCCCATGTC 29790 ||||| || | |||||||| Sbjct 12224 GGCACACCCAAACCCATGTC 12205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405993906101200