Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq13173 140 3e-28 >seq13173 Length=15772 Score = 140 bits (154), Expect = 3e-28 Identities = 472/721 (65%), Gaps = 18/721 (2%) Strand=Plus/Minus Query 4369 CTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTC 4428 |||| |||| || || || |||||||| || || | ||| |||| ||| || || | Sbjct 14623 CTACCAGCAGACGATCGGCGACAAATTCAATGTATTCAGACATCAGTTTGCAATTCATGC 14564 Query 4429 CAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTG 4488 ||||||| | || || | |||| ||| | ||||| ||||| || ||| || |||| Sbjct 14563 CAATTAAGTTTACGGGCAAAGCGTCTGTGAGGAACTCCTGTTCGATGACTACAGCATCTG 14504 Query 4489 TGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCA--AACAATAA 4546 || || || | || || | ||| || | || || | |||| | | Sbjct 14503 AAATGATTTCAATAATGCGTTCACGAC-TGGGACGTTGAACCAG-ATGCTGGAACA-TCA 14447 Query 4547 ACACG-CAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTA 4605 |||| ||||||| ||||| | ||| ||||| | ||| | || || || || || | Sbjct 14446 GCACGGCAAAATCGCAATGTAGACCCTCGTCGCGTGAAATTAACTCATTTGAGAAGGTAA 14387 Query 4606 ATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGA 4665 |||||||| | ||| | ||| || | |||||| || | || || ||| ||||| Sbjct 14386 GACCGGGCATAAGACCGCGCTTCTTCAACCAAAAGATTGAAGCGAAGCTGCCACTAAAGA 14327 Query 4666 ATATGCCTTCTACGGCGGCAAACGCTACTAATCGGG--ACCCGAACGAGCTGGCTTTGTC 4723 | |||||||| ||||||||||| |||| |||| | ||| || |||| ||||| Sbjct 14326 AGATGCCTTCGACGGCGGCAAAAGCTA-TAATGCGTTCACCAAAATTGGCTGACTTTGAA 14268 Query 4724 TTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGC 4783 |||||| | ||||||| || || ||| || || || || | || || Sbjct 14267 GA-AATCCAAGCGAGGGCCCAGTCCGCCTTGCGCTTTACTGCTGGCATAGTCTCAATCGC 14209 Query 4784 GTTAAATAATTTACTTTT-TTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTAT 4842 || || || || | || | || || | ||||| ||||| || |||| ||| | Sbjct 14208 ATTGAA-AAGATAGTCGCGTTGATGAGGATCACGTATATAGGTGTCGATAAGTACGCTGT 14150 Query 4843 ACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTG 4902 ||||||| ||||| | || || || ||||| || || || ||||| || | || || | Sbjct 14149 ACATTTCCGAATGCACGTTCTCCATGGCAATTTGGAAGCCATAAAAACAACGTGCCTCGG 14090 Query 4903 TTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGG 4962 ||| || || || | | ||| | |||||| | |||||||| || || || || | Sbjct 14089 TTATCTGCACCTCCTGGCTAAAGCGTTCTACCAGATTTTCGTTGACAATGCCATCTGATG 14030 Query 4963 CTGCAAAAAACGCCAAAACATGAGATATAAAGT---ACTGTTCGTCAGGCTTAAGTTTTT 5019 | || || || ||||| |||||||||||||||| || | ||||| | || | Sbjct 14029 CGGCGAAGAATGCCAACACATGAGATATAAAGTGACGCTCATTGTCAG---TCAGGCGAT 13973 Query 5020 TCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCG 5079 |||| | | || || || | | ||| || ||||| || ||||| || || ||||| | Sbjct 13972 TCCAATCTGTCATGTCCTTGGACAGATCCACCTCTTCGACCGTCCAGAAAGATGCTTCGG 13913 Query 5080 C 5080 | Sbjct 13912 C 13912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426871600388600