Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq5260 95.1 9e-15 >seq5260 Length=19401 Score = 95.1 bits (104), Expect = 9e-15 Identities = 312/483 (65%), Gaps = 8/483 (2%) Strand=Plus/Minus Query 27139 TTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCT 27198 |||| || ||||| || | || || || || | |||||||| |||||| ||||| || Sbjct 12350 TTCAATGGATCCACATGGTTCAAATACACATGCGTGTCTCCCATGGTGTGCACAAAGTCG 12291 Query 27199 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 27258 ||||| | || || || || ||||| |||||||| ||||| | | || ||| ||| Sbjct 12290 CCCGGCTTGAGGCCAGTCACATGAGCGATCATGTAGGTGAGCAACGCATACGAGGCAATG 12231 Query 27259 TTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCT 27318 |||||||| || || | |||||||| | | || || | |||||| || ||||| Sbjct 12230 TTAAAGGGCACACCCAAACCCATGTCAGCGCTTCGTTGATATAACTGACAGGACAGCTCG 12171 Query 27319 CCA------TCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 ||| | | || || ||||| | | |||||| || || || ||||| Sbjct 12170 CCACGATCCTGGGACACATAGAACTGGGCGAAGCAGTGGCAAGGCGGCAGCGCCATTTTT 12111 Query 27373 CCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTG 27432 | || | || |||||||| ||| || || || | ||| ||| ||||| | Sbjct 12110 GGTATATCAATTGGATTCCAGGCAGACATAATAATCCGTCGATCTGATGGATTGTTGCGT 12051 Query 27433 ATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC-TACCCTCAT 27491 ||| ||| | | | |||||||||| | ||| | || | ||||| | | || Sbjct 12050 ATGGTGTCAATCACCTGACGCAGCTGATCGATGCCCTTGCCTGTATAGTCGTCGTCACAG 11991 Query 27492 GTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCC 27551 || | || | ||| || || || | |||||| || || || || ||||||| || || Sbjct 11990 GTGC-CATATTGTGCGCCAAAGTGGCGCCATTGAAAACCATAGACGGGTCCCAAATCGCC 11932 Query 27552 CTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCA 27611 | | | | || ||||| | || ||||| | | || | | || || || ||||| Sbjct 11931 GACAGCACGATCCTTAAAGCCGCACTGGTCCAGATATTCGCGCGTACTATTTGCATCCCA 11872 Query 27612 GAT 27614 ||| Sbjct 11871 GAT 11869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369353184780200