Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq5260 95.1 9e-15
>seq5260
Length=19401
Score = 95.1 bits (104), Expect = 9e-15
Identities = 312/483 (65%), Gaps = 8/483 (2%)
Strand=Plus/Minus
Query 27139 TTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCT 27198
|||| || ||||| || | || || || || | |||||||| |||||| ||||| ||
Sbjct 12350 TTCAATGGATCCACATGGTTCAAATACACATGCGTGTCTCCCATGGTGTGCACAAAGTCG 12291
Query 27199 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 27258
||||| | || || || || ||||| |||||||| ||||| | | || ||| |||
Sbjct 12290 CCCGGCTTGAGGCCAGTCACATGAGCGATCATGTAGGTGAGCAACGCATACGAGGCAATG 12231
Query 27259 TTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCT 27318
|||||||| || || | |||||||| | | || || | |||||| || |||||
Sbjct 12230 TTAAAGGGCACACCCAAACCCATGTCAGCGCTTCGTTGATATAACTGACAGGACAGCTCG 12171
Query 27319 CCA------TCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372
||| | | || || ||||| | | |||||| || || || |||||
Sbjct 12170 CCACGATCCTGGGACACATAGAACTGGGCGAAGCAGTGGCAAGGCGGCAGCGCCATTTTT 12111
Query 27373 CCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTG 27432
| || | || |||||||| ||| || || || | ||| ||| ||||| |
Sbjct 12110 GGTATATCAATTGGATTCCAGGCAGACATAATAATCCGTCGATCTGATGGATTGTTGCGT 12051
Query 27433 ATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC-TACCCTCAT 27491
||| ||| | | | |||||||||| | ||| | || | ||||| | | ||
Sbjct 12050 ATGGTGTCAATCACCTGACGCAGCTGATCGATGCCCTTGCCTGTATAGTCGTCGTCACAG 11991
Query 27492 GTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCC 27551
|| | || | ||| || || || | |||||| || || || || ||||||| || ||
Sbjct 11990 GTGC-CATATTGTGCGCCAAAGTGGCGCCATTGAAAACCATAGACGGGTCCCAAATCGCC 11932
Query 27552 CTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCA 27611
| | | | || ||||| | || ||||| | | || | | || || || |||||
Sbjct 11931 GACAGCACGATCCTTAAAGCCGCACTGGTCCAGATATTCGCGCGTACTATTTGCATCCCA 11872
Query 27612 GAT 27614
|||
Sbjct 11871 GAT 11869
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369353184780200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |