Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_031098.1 Length=40749 Score E Sequences producing significant alignments: (Bits) Value seq20195 538 9e-149 >seq20195 Length=46786 Score = 538 bits (596), Expect = 9e-149 Identities = 795/1116 (71%), Gaps = 24/1116 (2%) Strand=Plus/Plus Query 575 GGTAAAACATGGGTTGGTTGTTCAAGTCTTTGTGATAAGTCT---TGGTCTTTCCCTAAA 631 |||||||||||||| || |||||| || ||||| | ||||| ||| ||| |||||| Sbjct 18947 GGTAAAACATGGGTCGGATGTTCA--TCATTGTG-TCAGTCTGCATGGGCTTATCCTAAA 19003 Query 632 GTTCCGTTGGGTTACTTTGCTCCAACGTATCCGCAGATCCGAGATATCTTTTTCCCTACG 691 | ||| | || ||||| || || || ||||||||||| || ||||| || || || ||| Sbjct 19004 GCACCGCTTGGATACTTCGCACCGACCTATCCGCAGATTCGGGATATTTTCTTTCCAACG 19063 Query 692 ATTGATGAAGTAGCTTTCGATTGGGGATTGAAGACAAAGATCTATGAATCTAACAAAGAA 751 ||||| ||||| || ||||| ||||| || || | | || | ||||| ||||| ||| Sbjct 19064 ATTGAGGAAGTGGCATTCGACTGGGGCTTAAATGTAGACATTAAAGAATCCAACAAGGAA 19123 Query 752 GTTGATCTTTACTATGGCCGCCAATATCGAAGCACAATTATTTGCCGATCAATGGAAAAG 811 || ||| |||| || || | || || || | || || |||||||| || |||||||| Sbjct 19124 GTCGATGTTTATTACGGTAGTCAGTACCGGACAACCATCATTTGCCGCTCGATGGAAAAA 19183 Query 812 CCCAATACTATTGTAGGTTTTAAGATTGGTCATGCGC--TGATTGATGAGCTTGATGTGA 869 || | || ||||| || |||||| | | | |||| | | ||||| ||||| |||| Sbjct 19184 CCGCAGACCATTGTCGGGTTTAAGGTA--TTAAGCGCATTAGTCGATGAACTTGACGTGA 19241 Query 870 TGACAAAGGTCAAGGCTCAACAAGCTTGGCGTAAGATCATTGCTCGTATGCGATATAAAC 929 ||| |||| || || || | | |||||||| ||||||||||||||||| || | Sbjct 19242 TGAACAAGGATAAAGCACAGGTATCATGGCGTAAAATCATTGCTCGTATGCGTTACACCT 19301 Query 930 AAGCTGGTTTGTTGAACGGTATTGATGTTGCAACAACGCCAGAGGGCTTTAAGTTCACTC 989 | | ||| || ||| | ||||| ||||||||||| ||||||||||| ||||||||| Sbjct 19302 ACCCCGGTGCTTTAAACCGGATTGACGTTGCAACAACACCAGAGGGCTTCAAGTTCACTT 19361 Query 990 ATGAGCAATTTGTCAAAGAAGCAAACCAAAGCGAGGCTAAGCGCGCTCTATATGGAATGA 1049 ||||||| |||||||||||||| || ||| | || |||||| |||| || ||| Sbjct 19362 ATGAGCAGTTTGTCAAAGAAGCCAATTCAAGTCCGCAGAAACGCGCTTTATACGGCATGG 19421 Query 1050 TTCAAGCTTCCACCTATGATAATGAAGCCAATCTTCCTGATGACTACATTGCATCATTGT 1109 | |||||||| || ||||| ||||| || | || || || || | ||| | Sbjct 19422 TGCAAGCTTCGACTTATGACAATGAGAAGAACTTGCCGCCGGATTATATCGAATCGCTTC 19481 Query 1110 TTGAGTCTTACCCACCTCAATTGATTTCAGCCTACTTAAAAGGGCAATTCGTAAATTTAA 1169 || || |||||||| ||||||||| |||||| | ||| || || || || || | Sbjct 19482 GGGAATCCTACCCACCGCAATTGATTGAAGCCTATCTGCGAGGTCAGTTTGTCAACTTGA 19541 Query 1170 CGAGTGGGGCTGTATATCCAGACTTCGACCGGACCTTAAACCATACAGATGAGGAAATAA 1229 | ||||| || || ||||| || || || |||| | || ||||| |||| ||||| Sbjct 19542 CCAGTGGCGCGGTTTATCCTGATTTTGATCGGAAGCTGAATCATACCGATGCTGAAATCC 19601 Query 1230 GACCTAATGAGGCTTTACTCATTGGTATGGACTTCAACGTCTTGAAGATGGCAGCTGTTG 1289 | || ||| ||| || ||||| ||||| || ||||| |||| ||||| || | | Sbjct 19602 AATCTGGTGAACATTTGCTGATTGGCATGGATTTTAACGTGCTGAAAATGGCCGCAGCGG 19661 Query 1290 TTTATGTGATTCGAGATGGCAAGCCAAGAGCT-TTAGATGAGTTGGTCGGTGTGCGTGAT 1348 ||||||||||||| | || ||||| ||| | |||||| | || || | | ||| Sbjct 19662 TTTATGTGATTCGCCAGGGTGTGCCAA-TGCTACTTGATGAGATCGTGGGCGCAAGGGAT 19720 Query 1349 ACGCCAACAATGGCCGATCTATTAATTGAAAAG---TTCCCAAACCATGAGATGACAGTT 1405 ||||| |||||||| | ||| || || || | ||| |||| | || || | Sbjct 19721 ACGCCGACAATGGC---GCAATTGATCAAAGAGCGCTACCCGTTCCATCAAATAACCATC 19777 Query 1406 ATCCCTGATGCGGCAGGCCAAGCTACTTCATCAAAAAAGAGTAGCGAATCTGATCATGCA 1465 | || ||||| ||||||||||| |||||||||||||| ||||| ||||| || ||||| Sbjct 19778 TTTCCAGATGCAGCAGGCCAAGCGACTTCATCAAAAAACAGTAGTGAATCAGACCATGCC 19837 Query 1466 ATCTTGAGACAGAAGGGCTTAAGGGTCGAAGTCAATTCAACAAACCCGAACATTAAAGAC 1525 ||| ||||| | ||||| | | ||||| || |||||||| || |||||| Sbjct 19838 ATCCTGAGAGCGTCAGGCTTTAAACTTGAAGTAAACGGCACAAACCCAGCAATCAAAGAC 19897 Query 1526 CGAATTAATGCAGTAAATGCTTTGATCTTAAATGGCAATGGTGAGCGAACACTCTTA--- 1582 ||| | ||||| || |||||| || | || || ||||| || | ||| Sbjct 19898 CGATTGAATGCGGTGAATGCTGCTATTTGCAACTCGAAAGGTGAACG---CTTGTTAAGG 19954 Query 1583 GTCAATACAAATAAATGCCCAAGACTCACAGAGACCTTTGAGCAGCAAGTTTATGACGAT 1642 || ||||| ||||||||||| ||| ||||| | ||||||||||||| ||||||||| Sbjct 19955 GTGAATACCAATAAATGCCCTAGAGCGACAGAAGCACTTGAGCAGCAAGTCTATGACGAT 20014 Query 1643 TTTGGAATGCCAGATAAGAAATCAGGCTTGGACCAT 1678 || || ||||||||||| || || || |||| ||| Sbjct 20015 TTCGGGATGCCAGATAAAAAGTCTGGACTGGATCAT 20050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130222291984400