Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_031098.1
Length=40749
Score E
Sequences producing significant alignments: (Bits) Value
seq20195 538 9e-149
>seq20195
Length=46786
Score = 538 bits (596), Expect = 9e-149
Identities = 795/1116 (71%), Gaps = 24/1116 (2%)
Strand=Plus/Plus
Query 575 GGTAAAACATGGGTTGGTTGTTCAAGTCTTTGTGATAAGTCT---TGGTCTTTCCCTAAA 631
|||||||||||||| || |||||| || ||||| | ||||| ||| ||| ||||||
Sbjct 18947 GGTAAAACATGGGTCGGATGTTCA--TCATTGTG-TCAGTCTGCATGGGCTTATCCTAAA 19003
Query 632 GTTCCGTTGGGTTACTTTGCTCCAACGTATCCGCAGATCCGAGATATCTTTTTCCCTACG 691
| ||| | || ||||| || || || ||||||||||| || ||||| || || || |||
Sbjct 19004 GCACCGCTTGGATACTTCGCACCGACCTATCCGCAGATTCGGGATATTTTCTTTCCAACG 19063
Query 692 ATTGATGAAGTAGCTTTCGATTGGGGATTGAAGACAAAGATCTATGAATCTAACAAAGAA 751
||||| ||||| || ||||| ||||| || || | | || | ||||| ||||| |||
Sbjct 19064 ATTGAGGAAGTGGCATTCGACTGGGGCTTAAATGTAGACATTAAAGAATCCAACAAGGAA 19123
Query 752 GTTGATCTTTACTATGGCCGCCAATATCGAAGCACAATTATTTGCCGATCAATGGAAAAG 811
|| ||| |||| || || | || || || | || || |||||||| || ||||||||
Sbjct 19124 GTCGATGTTTATTACGGTAGTCAGTACCGGACAACCATCATTTGCCGCTCGATGGAAAAA 19183
Query 812 CCCAATACTATTGTAGGTTTTAAGATTGGTCATGCGC--TGATTGATGAGCTTGATGTGA 869
|| | || ||||| || |||||| | | | |||| | | ||||| ||||| ||||
Sbjct 19184 CCGCAGACCATTGTCGGGTTTAAGGTA--TTAAGCGCATTAGTCGATGAACTTGACGTGA 19241
Query 870 TGACAAAGGTCAAGGCTCAACAAGCTTGGCGTAAGATCATTGCTCGTATGCGATATAAAC 929
||| |||| || || || | | |||||||| ||||||||||||||||| || |
Sbjct 19242 TGAACAAGGATAAAGCACAGGTATCATGGCGTAAAATCATTGCTCGTATGCGTTACACCT 19301
Query 930 AAGCTGGTTTGTTGAACGGTATTGATGTTGCAACAACGCCAGAGGGCTTTAAGTTCACTC 989
| | ||| || ||| | ||||| ||||||||||| ||||||||||| |||||||||
Sbjct 19302 ACCCCGGTGCTTTAAACCGGATTGACGTTGCAACAACACCAGAGGGCTTCAAGTTCACTT 19361
Query 990 ATGAGCAATTTGTCAAAGAAGCAAACCAAAGCGAGGCTAAGCGCGCTCTATATGGAATGA 1049
||||||| |||||||||||||| || ||| | || |||||| |||| || |||
Sbjct 19362 ATGAGCAGTTTGTCAAAGAAGCCAATTCAAGTCCGCAGAAACGCGCTTTATACGGCATGG 19421
Query 1050 TTCAAGCTTCCACCTATGATAATGAAGCCAATCTTCCTGATGACTACATTGCATCATTGT 1109
| |||||||| || ||||| ||||| || | || || || || | ||| |
Sbjct 19422 TGCAAGCTTCGACTTATGACAATGAGAAGAACTTGCCGCCGGATTATATCGAATCGCTTC 19481
Query 1110 TTGAGTCTTACCCACCTCAATTGATTTCAGCCTACTTAAAAGGGCAATTCGTAAATTTAA 1169
|| || |||||||| ||||||||| |||||| | ||| || || || || || |
Sbjct 19482 GGGAATCCTACCCACCGCAATTGATTGAAGCCTATCTGCGAGGTCAGTTTGTCAACTTGA 19541
Query 1170 CGAGTGGGGCTGTATATCCAGACTTCGACCGGACCTTAAACCATACAGATGAGGAAATAA 1229
| ||||| || || ||||| || || || |||| | || ||||| |||| |||||
Sbjct 19542 CCAGTGGCGCGGTTTATCCTGATTTTGATCGGAAGCTGAATCATACCGATGCTGAAATCC 19601
Query 1230 GACCTAATGAGGCTTTACTCATTGGTATGGACTTCAACGTCTTGAAGATGGCAGCTGTTG 1289
| || ||| ||| || ||||| ||||| || ||||| |||| ||||| || | |
Sbjct 19602 AATCTGGTGAACATTTGCTGATTGGCATGGATTTTAACGTGCTGAAAATGGCCGCAGCGG 19661
Query 1290 TTTATGTGATTCGAGATGGCAAGCCAAGAGCT-TTAGATGAGTTGGTCGGTGTGCGTGAT 1348
||||||||||||| | || ||||| ||| | |||||| | || || | | |||
Sbjct 19662 TTTATGTGATTCGCCAGGGTGTGCCAA-TGCTACTTGATGAGATCGTGGGCGCAAGGGAT 19720
Query 1349 ACGCCAACAATGGCCGATCTATTAATTGAAAAG---TTCCCAAACCATGAGATGACAGTT 1405
||||| |||||||| | ||| || || || | ||| |||| | || || |
Sbjct 19721 ACGCCGACAATGGC---GCAATTGATCAAAGAGCGCTACCCGTTCCATCAAATAACCATC 19777
Query 1406 ATCCCTGATGCGGCAGGCCAAGCTACTTCATCAAAAAAGAGTAGCGAATCTGATCATGCA 1465
| || ||||| ||||||||||| |||||||||||||| ||||| ||||| || |||||
Sbjct 19778 TTTCCAGATGCAGCAGGCCAAGCGACTTCATCAAAAAACAGTAGTGAATCAGACCATGCC 19837
Query 1466 ATCTTGAGACAGAAGGGCTTAAGGGTCGAAGTCAATTCAACAAACCCGAACATTAAAGAC 1525
||| ||||| | ||||| | | ||||| || |||||||| || ||||||
Sbjct 19838 ATCCTGAGAGCGTCAGGCTTTAAACTTGAAGTAAACGGCACAAACCCAGCAATCAAAGAC 19897
Query 1526 CGAATTAATGCAGTAAATGCTTTGATCTTAAATGGCAATGGTGAGCGAACACTCTTA--- 1582
||| | ||||| || |||||| || | || || ||||| || | |||
Sbjct 19898 CGATTGAATGCGGTGAATGCTGCTATTTGCAACTCGAAAGGTGAACG---CTTGTTAAGG 19954
Query 1583 GTCAATACAAATAAATGCCCAAGACTCACAGAGACCTTTGAGCAGCAAGTTTATGACGAT 1642
|| ||||| ||||||||||| ||| ||||| | ||||||||||||| |||||||||
Sbjct 19955 GTGAATACCAATAAATGCCCTAGAGCGACAGAAGCACTTGAGCAGCAAGTCTATGACGAT 20014
Query 1643 TTTGGAATGCCAGATAAGAAATCAGGCTTGGACCAT 1678
|| || ||||||||||| || || || |||| |||
Sbjct 20015 TTCGGGATGCCAGATAAAAAGTCTGGACTGGATCAT 20050
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 130222291984400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |