Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08]
69,511 sequences; 396,024,718 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq68007 104 2e-17
seq5959 93.3 4e-14
seq5117 89.7 4e-13
seq514 84.2 2e-11
>seq68007
Length=840
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
||||| || ||| | ||||| | ||||| |||||||| ||| ||| ||| | ||
Sbjct 13 ATGCAGATCTTCGTAAAAACTCTTACGGGTAAAACCATCACCCTTGAAGTTGAAGCTTCA 72
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | || | ||| ||||| || ||||| || | ||| |||||||
Sbjct 73 GACACAATAGAAAATGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCCCCAGATCAA 132
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
||| | | || ||||| |||||||||||||| ||| || |||| | |||| || ||
Sbjct 133 CAACGTTTGATTTTTGCTGGCAAACAACTGGAGGATGGCAGAACTCTTTCCGACTATAAC 192
Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
||||| |||||||| || ||||| |||| | || | ||||||||
Sbjct 193 ATTCAAAAGGAATCAACACTTCATCTGGTTCTGCGCCTTCGAGGAGG 239
>seq5959
Length=1871824
Score = 93.3 bits (102), Expect = 4e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
|| ||||||||| | || |||||| ||| | || |||||||| || || |||||||||
Sbjct 1420770 GACAAAGAAGGTATCCCTCCAGATCAGCAACGTCTGATCTTTGCTGGAAAGCAACTGGAA 1420711
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174
||| | |||| | |||| ||||| || |||||||| ||||| ||||| | || ||
Sbjct 1420710 GATGGAAGAACTCTCTCCGACTACAACATCCAGAAGGAGTCTACACTTCATCTAGTTCTA 1420651
Query 29175 CGATTACGAGGAGG 29188
|| | ||||||||
Sbjct 1420650 CGTCTTCGAGGAGG 1420637
>seq5117
Length=2329582
Score = 89.7 bits (98), Expect = 4e-13
Identities = 160/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020
|||||| || ||| | ||||| |||||||| || || ||||| || ||| | |
Sbjct 1164795 AATGCAGATCTTCGTTAAAACCTTGACGGGAAAGACAATTACTTTGGAGGTAGAAGCTTC 1164854
Query 29021 AGAGACGGTGGCCGATCTT--AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078
|| ||| | | || | | |||| |||| || || |||||||| | || |||
Sbjct 1164855 GGACACGATCGA-GAACGTCAAAGCGAAAA-TTCAGGACAAAGAAGGCATCCCTCCGGAT 1164912
Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138
||||||||| | |||||||| || || ||||| ||||| | ||| | | |||||
Sbjct 1164913 CAACAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGTACTCTCTCAGATTAT 1164972
Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
||||||||||||||||| || | ||| |||| | || || ||||| ||
Sbjct 1164973 AATATTCAGAAGGAATCGACCTTGCACTTGGTTCTCCGTTTGCGAGGTGG 1165022
>seq514
Length=2723796
Score = 84.2 bits (92), Expect = 2e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134
|||||| |||||| | || ||||| || || ||| |||||||| || || || | ||
Sbjct 26595 AGATCAGCAAAGATTGATTTTTGCTGGTAAGCAATTGGAAGATGGCAGGACATTGTCGGA 26536
Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
|| ||||| |||||||||||||| || ||| |||| || || || ||||| ||
Sbjct 26535 CTATAATATCCAGAAGGAATCTACGCTGCACTTGGTATTGCGCTTGCGAGGCGG 26482
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427973128598705
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |