Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq68007 104 2e-17 seq5959 93.3 4e-14 seq5117 89.7 4e-13 seq514 84.2 2e-11 >seq68007 Length=840 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | ||||| | ||||| |||||||| ||| ||| ||| | || Sbjct 13 ATGCAGATCTTCGTAAAAACTCTTACGGGTAAAACCATCACCCTTGAAGTTGAAGCTTCA 72 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| ||||| || ||||| || | ||| ||||||| Sbjct 73 GACACAATAGAAAATGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCCCCAGATCAA 132 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | || ||||| |||||||||||||| ||| || |||| | |||| || || Sbjct 133 CAACGTTTGATTTTTGCTGGCAAACAACTGGAGGATGGCAGAACTCTTTCCGACTATAAC 192 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| |||||||| || ||||| |||| | || | |||||||| Sbjct 193 ATTCAAAAGGAATCAACACTTCATCTGGTTCTGCGCCTTCGAGGAGG 239 >seq5959 Length=1871824 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||||||| | || |||||| ||| | || |||||||| || || ||||||||| Sbjct 1420770 GACAAAGAAGGTATCCCTCCAGATCAGCAACGTCTGATCTTTGCTGGAAAGCAACTGGAA 1420711 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | |||| | |||| ||||| || |||||||| ||||| ||||| | || || Sbjct 1420710 GATGGAAGAACTCTCTCCGACTACAACATCCAGAAGGAGTCTACACTTCATCTAGTTCTA 1420651 Query 29175 CGATTACGAGGAGG 29188 || | |||||||| Sbjct 1420650 CGTCTTCGAGGAGG 1420637 >seq5117 Length=2329582 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || ||| | ||||| |||||||| || || ||||| || ||| | | Sbjct 1164795 AATGCAGATCTTCGTTAAAACCTTGACGGGAAAGACAATTACTTTGGAGGTAGAAGCTTC 1164854 Query 29021 AGAGACGGTGGCCGATCTT--AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 || ||| | | || | | |||| |||| || || |||||||| | || ||| Sbjct 1164855 GGACACGATCGA-GAACGTCAAAGCGAAAA-TTCAGGACAAAGAAGGCATCCCTCCGGAT 1164912 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 ||||||||| | |||||||| || || ||||| ||||| | ||| | | ||||| Sbjct 1164913 CAACAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGTACTCTCTCAGATTAT 1164972 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||||||||| || | ||| |||| | || || ||||| || Sbjct 1164973 AATATTCAGAAGGAATCGACCTTGCACTTGGTTCTCCGTTTGCGAGGTGG 1165022 >seq514 Length=2723796 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 |||||| |||||| | || ||||| || || ||| |||||||| || || || | || Sbjct 26595 AGATCAGCAAAGATTGATTTTTGCTGGTAAGCAATTGGAAGATGGCAGGACATTGTCGGA 26536 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| |||||||||||||| || ||| |||| || || || ||||| || Sbjct 26535 CTATAATATCCAGAAGGAATCTACGCTGCACTTGGTATTGCGCTTGCGAGGCGG 26482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427973128598705