Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq68007 104 2e-17 seq5117 87.8 1e-12 seq52431 86.0 5e-12 seq514 84.2 2e-11 >seq68007 Length=840 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | ||||| | ||||| |||||||| ||| ||| ||| | || Sbjct 13 ATGCAGATCTTCGTAAAAACTCTTACGGGTAAAACCATCACCCTTGAAGTTGAAGCTTCA 72 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| ||||| || ||||| || | ||| ||||||| Sbjct 73 GACACAATAGAAAATGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCCCCAGATCAA 132 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | || ||||| ||||||||| |||| ||| || |||| | |||| || || Sbjct 133 CAACGTTTGATTTTTGCTGGCAAACAACTGGAGGATGGCAGAACTCTTTCCGACTATAAC 192 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||||||| || ||||| |||| | || | |||||||| Sbjct 193 ATTCAAAAGGAATCAACACTTCATCTGGTTCTGCGCCTTCGAGGAGG 239 >seq5117 Length=2329582 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || ||||||| |||||||| || ||||| || ||| || | || Sbjct 1167633 ATGCAGATTTTTGTCAAAACTTTGACGGGAAAGACCATCACATTGGAAGTTGAGGCGTCA 1167692 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | || |||| |||||| || || ||||| | || ||||||| Sbjct 1167693 GACACGATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGAATTCCTCCAGATCAA 1167752 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 || ||| | |||||||| || |||||| | ||||| || | ||| | | ||||| | Sbjct 1167753 CAGAGATTGATCTTTGCTGGAAAACAACTCGAAGACGGTCGCACACTGT--CTGATTATA 1167810 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 | |||||||||||||| ||||| || |||| || Sbjct 1167811 ACATTCAAAAGGAATCCACTCTGCATTTGGTTTT 1167844 >seq52431 Length=384 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | || || | ||||| |||||||| ||| ||| ||| | || Sbjct 78 ATGCAGATCTTCGTGAAGACTCTCACGGGTAAAACCATCACCCTTGAAGTTGAAGCTTCA 137 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| ||||| || ||||| || | || |||||| Sbjct 138 GACACAATAGAAAATGTGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCTCCAGATCAG 197 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || | || || ||||| || |||||| | || ||| | |||| | |||| ||||| Sbjct 198 CAGCGTCTGATTTTTGCTGGTAAACAACTTGAGGATGGTAGAACTCTTTCCGACTACAAC 257 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||||||| || ||||| |||| || || | |||||||| Sbjct 258 ATTCAAAAGGAATCCACACTTCATCTGGTTTTGCGTCTTCGAGGAGG 304 >seq514 Length=2723796 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGA 25207 |||||| |||||| | || ||||| || || |||||||||||| || || || | || Sbjct 26595 AGATCAGCAAAGATTGATTTTTGCTGGTAAGCAATTGGAAGATGGCAGGACATTGTCGGA 26536 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||| || ||||||||||| || ||| |||| || || || ||||| || Sbjct 26535 CTATAATATCCAGAAGGAATCTACGCTGCACTTGGTATTGCGCTTGCGAGGCGG 26482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410448787200554