Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq5117 118 1e-21 seq1104 118 1e-21 seq5959 116 4e-21 seq68007 114 1e-20 seq52431 113 5e-20 seq2744 105 7e-18 >seq5117 Length=2329582 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || ||||| ||| | || || || ||||| ||| |||| ||||| || || Sbjct 1164568 ATGCAGATTTTTGTAAAGACGTTGACCGGAAAGACCATAACCCTCGAGGTCGAGGCTTCC 1164627 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| ||| |||| ||||| || |||||||| | ||||| Sbjct 1164628 GACACTATTGAGAACG-TAAAGGCAAAGATTCAGGACAAGGAAGGCATCCCACCTGACCA 1164686 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| ||| || || ||||| || |||| |||||| | |||||||| Sbjct 1164687 GCAACGTTTGATCTTCGCTGGAAAGCAGCTTGAAGACGGACGCACCTTGTCTGACTACAA 1164746 Query 40869 CATCCAGAAGGA 40880 ||||||||||| Sbjct 1164747 TATCCAGAAGGA 1164758 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/215 (71%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| ||||| |||||||| ||||| | || ||||| || | Sbjct 1166948 ATGCAGATTTTCGTCAAAACTCTCACTGGCAAAACTATCACATTGGAGGTCGAGGCTTCA 1167007 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| ||||||| ||||||||||| || || | || || Sbjct 1167008 GACACAATCGAGAACG-TGAAGGCGAAAATTCAAGACAAAGAGGGTATTCCTCCCGATCA 1167066 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || || ||||| || || |||| ||||| | || ||||| Sbjct 1167067 GCAGAGATTGATCTTTGCCGGAAAACAACTCGAAGACGGACGCACATTGTCTGATTACAA 1167126 Query 40869 CA-TCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 | || ||||||| | ||| | ||| |||| ||| Sbjct 1167127 TATTCAAGAAGGAATCTACGTTACATTTAGTTTTG 1167161 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| ||||| || || || ||||| || ||||| ||||| | || ||||| || | Sbjct 1167861 ATGCAGATATTTGTCAAGACTCTCACTGGGAAAACTATCACACTGGAGGTCGAGGCTTCG 1167920 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | || | |||||||| |||||||||||||| || | || || Sbjct 1167921 GACACGATCGAGAATGTAAAAGCAAAAATTCAAGACAAAGAGGGCATTCCTCCCGATCAA 1167980 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| |||| || | ||| ||||| || || || |||| || || | ||||||||| Sbjct 1167981 CAAAGACTGATTTTCGCTGGCAAGCAACTCGAGGACGGACGAACTTTGTCCGACTACAAT 1168040 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| || | || || || || || | || | || ||||| Sbjct 1168041 ATCCAGAAAGAATCTACACTTCACCTTGTACTTCGACTTAGAGGCGG 1168087 >seq1104 Length=1074228 Score = 118 bits (130), Expect = 1e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| |||||||| || ||||| ||| | || || || ||| || Sbjct 390845 ATGCAGATCTTTGTGAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTAGAGGCCTCC 390904 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| ||||| ||||| | || || Sbjct 390905 GACACCATCGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCAGATCAA 390964 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| |||||||||||||| || | |||||| || ||| |||||| Sbjct 390965 CAGCGGCTCATCTTCGCTGGCAAACAGCTGGAGGATGGGCGCACTCTTTCCGATTACAAC 391024 Query 40870 ATCCAGAA 40877 || ||||| Sbjct 391025 ATTCAGAA 391032 >seq5959 Length=1871824 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| ||||| || ||||||||||| | || || ||||| | Sbjct 1420863 ATGCAAATCTTTGTGAAAACCCTCACTGGAAAAACCATCACTCTTGAGGTGGAAGCTTCT 1420804 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | |||| | || || | |||||||| || ||||| | || ||| Sbjct 1420803 GATACTATAGAGAATGTCAAAGCTAAGATCCAAGACAAAGAAGGTATCCCTCCAGATCAG 1420744 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| || || || || ||||| || | | || ||| |||||||||| Sbjct 1420743 CAACGTCTGATCTTTGCTGGAAAGCAACTGGAAGATGGAAGAACTCTCTCCGACTACAAC 1420684 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || |||||||| Sbjct 1420683 ATCCAGAAGGAGTCTACACTTCATCTAGT 1420655 >seq68007 Length=840 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||||||||| || ||||| |||||||||||| | || || ||||| | Sbjct 13 ATGCAGATCTTCGTAAAAACTCTTACGGGTAAAACCATCACCCTTGAAGTTGAAGCTTCA 72 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| ||||| | ||||||||||| || ||| | || || Sbjct 73 GACACAATAGAAAATGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCCCCAGATCAA 132 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | || |||||||| ||||| || | | || || |||||| ||| Sbjct 133 CAACGTTTGATTTTTGCTGGCAAACAACTGGAGGATGGCAGAACTCTTTCCGACTATAAC 192 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 || || ||||| | || || ||||| || ||||| Sbjct 193 ATTCAAAAGGAATCAACACTTCATCTGGTTCTGCGC 228 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || || || ||||| |||||||| || ||| | || || ||||| | Sbjct 240 AATGCAAATTTTTGTGAAGACTCTCACCGGCAAAACAATTACCCTTGAAGTTGAAGCTTC 299 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | | | ||||| | || | ||||| | || ||||| || ||||| | || | Sbjct 300 GGATACCATAGAAAACG-TAAAAGCCAAAATACAAGATAAAGAAGGAATCCCACCTGATC 358 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | || || | |||| ||| || |||||||| || |||| | || || ||| |||| Sbjct 359 AACAGCGTTTAATCTTCGCAGGGAAACAGCTAGAAGACGGTAGGACTCTTTCCGATTACA 418 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||| ||||| | || || || |||| || || Sbjct 419 ACATCCAAAAGGAATCTACACTCCACTTAGTTTTACG 455 >seq52431 Length=384 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| |||||||||||| | || || ||||| | Sbjct 78 ATGCAGATCTTCGTGAAGACTCTCACGGGTAAAACCATCACCCTTGAAGTTGAAGCTTCA 137 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| ||||| | ||||||||||| || || | || ||| Sbjct 138 GACACAATAGAAAATGTGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCTCCAGATCAG 197 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | || || ||||| || || || | | || || |||||||||| Sbjct 198 CAGCGTCTGATTTTTGCTGGTAAACAACTTGAGGATGGTAGAACTCTTTCCGACTACAAC 257 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || ||||| |||| || ||||| || ||||| Sbjct 258 ATTCAAAAGGAATCCACACTTCATCTGGTTTTGCG 292 >seq2744 Length=396707 Score = 105 bits (116), Expect = 7e-18 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 116742 ATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATC 116801 |||| ||| || || |||| || |||||||| ||| || |||||||| ||||||| Sbjct 260483 ATTTTATCTCTCATGTCTTGGCATTCTTCGCCGCTTCCGATGGTATCGTCAATGAGAATC 260542 Query 116802 TGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTC 116861 || | ||| | ||| |||||| ||| | | ||||| || || || ||||||||||| | Sbjct 260543 TGATTGAGAGGTTCAGTCAGGAAGTGAAAATCGCCGAAGCACGTTGTTTCTACGGCTTCC 260602 Query 116862 AGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 | || ||||| ||||| | || || |||||||| || ||||| || || ||| Sbjct 260603 AAATTGCCATAGAGAATATCCATTCTGAAATGTACTCTTTGCTCATTGAAACTTAC 260658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514771532477360