Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq5117 136 6e-27 seq68007 116 6e-21 seq5959 100 4e-16 seq5636 86.0 9e-12 >seq5117 Length=2329582 Score = 136 bits (150), Expect = 6e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || ||||| || || ||||| || ||| | || | |||||| Sbjct 1167405 ATGCAGATTTTTGTCAAAACACTTACTGGTAAAACGATCACTCTGGAAGTCGAAGCATCA 1167464 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| |||||||| || |||||||| || || || ||||| Sbjct 1167465 GACACGATCGAGAATGTTAAAGCTAAAATTCAGGACAAAGAAGGAATCCCTCCGGATCAG 1167524 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || ||||| ||||| ||| | || || | || || | |||||||||| Sbjct 1167525 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGTACTCTCTCAGATTATAAT 1167584 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| || ||||| |||||| | ||||| ||||||||||| Sbjct 1167585 ATTCAGAAGGAATCGACCTTGCACTTGGTTCTCCGTTTGCGAGGTGGTAT 1167634 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || ||||||| || || || || | ||| | || || Sbjct 1167177 ATGCAGATTTTCGTCAAAACTTTAACAGGAAAGACCATCACATTGGAGGTCGAGGCTTCA 1167236 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| || | || |||||||||||| ||||||||||| || || |||||| Sbjct 1167237 GACACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAAGGTATTCCTCCCGATCAA 1167296 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | || ||||| |||||||| | || || | || ||||| ||||| ||| Sbjct 1167297 CAGAGATTGATCTTTGCCGGAAAACAGCTCGAAGACGGACGCACATTGTCTGATTACAAT 1167356 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||| || |||||||||||||| | | || |||||||| Sbjct 1167357 ATTCAAAAAGAATCCACATTGCATTTGGTTTTGAGACTTCGCGGTGGTAT 1167406 Score = 123 bits (136), Expect = 4e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | || || | || || || || || ||| | ||| | ||||| Sbjct 1164795 AATGCAGATCTTCGTTAAAACCTTGACGGGAAAGACAATTACTTTGGAGGTAGAAGCTTC 1164854 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || || | ||| ||||||||| || |||||||| || || || ||||| Sbjct 1164855 GGACACGATCGAGAACGTCAAAGCGAAAATTCAGGACAAAGAAGGCATCCCTCCGGATCA 1164914 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || ||||| ||||| ||| | || || | || || | ||||||||| Sbjct 1164915 ACAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGTACTCTCTCAGATTATAA 1164974 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| || ||||| || ||||| |||||| | ||||| ||||||||||| Sbjct 1164975 TATTCAGAAGGAATCGACCTTGCACTTGGTTCTCCGTTTGCGAGGTGGTAT 1165025 Score = 123 bits (136), Expect = 4e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 |||||||| ||||| ||||| || || || ||||| || ||| | || || || |||||| Sbjct 1165108 AAAATTCAGGATAAGGAAGGAATCCCTCCAGATCAGCAGAGGTTGATCTTCGCCGGAAAA 1165167 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | || ||| | ||||| || ||||| || ||||| ||||||||||| |||||| Sbjct 1165168 CAGCTCGAAGATGGCCGAACTCTATCTGATTACAACATTCAGAAAGAATCAACATTGCAT 1165227 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| | |||||||| |||||||| Sbjct 1165228 TTGGTTCTCCGTTTACGTGGTGGTAT 1165253 Score = 111 bits (122), Expect = 2e-19 Identities = 164/231 (71%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || || || ||||||||||| || | ||| | || || Sbjct 1166948 ATGCAGATTTTCGTCAAAACTCTCACTGGCAAAACTATCACATTGGAGGTCGAGGCTTCA 1167007 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| || | || |||||||||||| ||||| ||||| || || ||||| Sbjct 1167008 GACACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAGGGTATTCCTCCCGATCAG 1167067 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | || ||||| ||||||||| | || || | || ||||| ||||| ||| Sbjct 1167068 CAGAGATTGATCTTTGCCGGAAAACAACTCGAAGACGGACGCACATTGTCTGATTACAAT 1167127 Query 124719 ATTCAA-AAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| || ||||| || || ||||| ||||| | | || |||||||| Sbjct 1167128 ATTCAAGAAGGAATCTACGTTACATTTAGTTTTGAGACTTCGCGGTGGTAT 1167178 Score = 107 bits (118), Expect = 3e-18 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 124637 AGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAG 124696 ||| ||||| || || ||||| || || | || ||||| ||||||||| | || ||| | Sbjct 1166818 AGAGGGTATTCCTCCCGATCAGCAGAGATTGATCTTTGCCGGAAAACAACTTGAAGATGG 1166877 Query 124697 TCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTT 124756 ||| |||||| |||||||| ||||| |||||||| || |||||||||||||| | | Sbjct 1166878 TCGCACATTATCTGATTATAACATTCAGAAAGAATCCACATTGCATTTGGTTTTGAGACT 1166937 Query 124757 ACGAGGTGGTAT 124768 || |||||||| Sbjct 1166938 TCGCGGTGGTAT 1166949 Score = 107 bits (118), Expect = 3e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | ||||| || || || |||||||| || | ||| | || || Sbjct 1167861 ATGCAGATATTTGTCAAGACTCTCACTGGGAAAACTATCACACTGGAGGTCGAGGCTTCG 1167920 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| ||||| ||||||||||| ||||| || || || || |||||| Sbjct 1167921 GACACGATCGAGAATGTAAAAGCAAAAATTCAAGACAAAGAGGGCATTCCTCCCGATCAA 1167980 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || ||||| || || || ||| | ||||| | ||||| || || || ||| Sbjct 1167981 CAAAGACTGATTTTCGCTGGCAAGCAACTCGAGGACGGACGAACTTTGTCCGACTACAAT 1168040 Query 124719 ATTCAAAAAGAATCAAC 124735 || || |||||||| || Sbjct 1168041 ATCCAGAAAGAATCTAC 1168057 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 |||||||| || || ||||| || || || |||||||| || | || ||||| |||||| Sbjct 1167717 AAAATTCAGGACAAGGAAGGAATTCCTCCAGATCAACAGAGATTGATCTTTGCTGGAAAA 1167776 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| | || || |||| ||| | |||||||| |||||||| ||||| ||| ||||| Sbjct 1167777 CAACTCGAAGACGGTCGCACACTGTCTGATTATAACATTCAAAAGGAATCCACTCTGCAT 1167836 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| | | || || ||||| Sbjct 1167837 TTGGTTTTGAGGCTTCGTGGCGGTAT 1167862 >seq68007 Length=840 Score = 116 bits (128), Expect = 6e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || |||||||| || || | || ||||||| Sbjct 240 AATGCAAATTTTTGTGAAGACTCTCACCGGCAAAACAATTACCCTTGAAGTTGAAGCTTC 299 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || || ||||| ||||| |||||||||||||| || ||||||||||| Sbjct 300 GGATACCATAGAAAACGTAAAAGCCAAAATACAAGATAAAGAAGGAATCCCACCTGATCA 359 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | || || ||||| ||||| |||| || || | || | ||||| || Sbjct 360 ACAGCGTTTAATCTTCGCAGGGAAACAGCTAGAAGACGGTAGGACTCTTTCCGATTACAA 419 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || ||||| ||||| || | || || |||||||| | || || ||| Sbjct 420 CATCCAAAAGGAATCTACACTCCACTTAGTTTTACGACTTCGCGGAGGT 468 >seq5959 Length=1871824 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || || || || ||||| || ||| | ||| | ||||| | Sbjct 1420863 ATGCAAATCTTTGTGAAAACCCTCACTGGAAAAACCATCACTCTTGAGGTGGAAGCTTCT 1420804 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | ||| || || ||||| ||||||||||| || || ||||| Sbjct 1420803 GATACTATAGAGAATGTCAAAGCTAAGATCCAAGACAAAGAAGGTATCCCTCCAGATCAG 1420744 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || || ||||| ||||| ||| | || ||| | |||| | || || || Sbjct 1420743 CAACGTCTGATCTTTGCTGGAAAGCAACTGGAAGATGGAAGAACTCTCTCCGACTACAAC 1420684 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || | ||| | ||| ||||| | ||||| || || Sbjct 1420683 ATCCAGAAGGAGTCTACACTTCATCTAGTTCTACGTCTTCGAGGAGGAAT 1420634 >seq5636 Length=11654 Score = 86.0 bits (94), Expect = 9e-12 Identities = 175/260 (67%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 205699 CCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGA 205758 ||||| ||||||||| ||| | ||| || | |||| || |||||||| ||||||||| Sbjct 1088 CCTTGTCTTGTATAATCTGTGTGCATGTCTTTGTATTCGGCGCCAAAATGTCGCCATTGA 1147 Query 205759 AAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttata 205818 |||||||| || || || |||||||| |||| || | | || || | | | Sbjct 1148 AAACCATAGACAGGCCCCAAATCACCCTCTTCTCGGTTGGTGAAGCCGTAAGAGTCCAGA 1207 Query 205819 tattttaatgatccattttcatcccaaatatggattcctttattttttaGAATATTTGTA 205878 | || ||||| ||||||||||| || || || || | | ||| || | | Sbjct 1208 AAAGCCCGCGAACCATTCTCATCCCAAATGTGAATACCCTTGTCTGTTAATTCCTTAGAA 1267 Query 205879 TTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATTCCTCTCCAAAACATTGAT 205938 || || ||||| |||||||| | | ||| ||||| | ||| |||||| | | Sbjct 1268 TTTGTCGATCCTTTGATAAACCACAGCAGTTCCTCAACCACCGCTCGCCAAAATACTCTC 1327 Query 205939 TTTGTTGTAAATAATGGAAA 205958 || ||||| | |||||| || Sbjct 1328 TTAGTTGTCAGTAATGGGAA 1347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754799593724800