Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq5117 136 3e-27 seq1104 136 3e-27 seq68007 131 1e-25 seq52431 114 1e-20 seq5959 89.7 4e-13 >seq5117 Length=2329582 Score = 136 bits (150), Expect = 3e-27 Identities = 169/230 (73%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTT-TTGAATGTTGTAATCG 118568 |||| ||||| | |||||| || || || | ||||| || || |||||| |||||||| Sbjct 1167177 TACCACCGCGAAGTCTCAAAACTAAATGTAACGTAGATTCCTTCTTGAATATTGTAATCA 1167118 Query 118569 CTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGA 118628 || ||||| || ||||| |||||||| || |||| | | ||||||||||||| Sbjct 1167117 GACAATGTGCGTCCGTCTTCGAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGGA 1167058 Query 118629 GGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCG 118688 || || ||||| |||||| |||||| || || | |||| ||||| | |||| Sbjct 1167057 GGAATACCCTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCG 1166998 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| | || | |||||||| || |||||||| || ||||||||||| Sbjct 1166997 ACCTCCAATGTGATAGTTTTGCCAGTGAGAGTTTTGACGAAAATCTGCAT 1166948 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | |||||| ||||| || | ||| || ||||||||||| |||||||| Sbjct 1167405 TACCACCGCGAAGTCTCAAAACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAG 1167346 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||||| || |||||||||||||| || |||| | | ||| |||||||||| Sbjct 1167345 ACAATGTGCGTCCGTCTTCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGATCGGGAG 1167286 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || |||||| |||||| || || | |||| ||||| | ||||| Sbjct 1167285 GAATACCTTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGA 1167226 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | || || || || | |||||| || ||||||||||| Sbjct 1167225 CCTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 1167177 Score = 129 bits (142), Expect = 5e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||| | |||||| ||||| || || ||||| ||| || ||| || |||||||| || Sbjct 1168064 GTGAAGTGTAGATTCTTTCTGGATATTGTAGTCGGACAAAGTTCGTCCGTCCTCGAGTTG 1168005 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || |||||| | || || | || ||||||||||| |||||||| |||||| |||||| Sbjct 1168004 CTTGCCAGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCCTCTTTGTCTTGAATTTT 1167945 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 | ||| || | |||| ||||||| ||||||||| | || | ||||| || || Sbjct 1167944 TGCTTTTACATTCTCGATCGTGTCCGAAGCCTCGACCTCCAGTGTGATAGTTTTCCCAGT 1167885 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || ||||| |||||||| Sbjct 1167884 GAGAGTCTTGACAAATATCTGCAT 1167861 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| ||||| | |||||||| | || || || || || || ||||| || | Sbjct 1164794 CCGCCGCGCAATCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGAC 1164735 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| || || ||||| ||||||||| |||| | ||| ||||| || || || Sbjct 1164734 AAGGTGCGTCCGTCTTCAAGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCAGGTGGG 1164675 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||| |||||||| ||| ||| || || | || | ||||| | ||||||| Sbjct 1164674 ATGCCTTCCTTGTCCTGAATCTTTGCCTTTACGTTCTCAATAGTGTCGGAAGCCTCGACC 1164615 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 |||| ||| | || || ||||||| || ||||||||||||||||||| Sbjct 1164614 TCGAGGGTTATGGTCTTTCCGGTCAACGTCTTTACAAAAATCTGCATGG 1164566 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || ||||| | | ||||| || | ||| || ||||| |||||||||||||| Sbjct 1165252 TACCACCACGTAAACGGAGAACCAAATGCAATGTTGATTCTTTCTGAATGTTGTAATCAG 1165193 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||| |||||||||||||| ||| |||| | | ||||||||| |||| Sbjct 1165192 ATAGAGTTCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAG 1165133 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||| || |||||| ||| || | |||| ||||| | ||| | Sbjct 1165132 GGATTCCTTCCTTATCCTGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAA 1165073 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | || || || |||| |||||| |||||||||||||| Sbjct 1165072 CTTCCAATGTGATGGTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1165024 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | ||||| ||||| || | || || || ||||||||||| ||||| Sbjct 1167861 TACCGCCACGAAGCCTCAAAACCAAATGCAGAGTGGATTCCTTTTGAATGTTATAATCAG 1167802 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||||| || ||||| ||||||||||| |||| | | ||| ||||| |||| Sbjct 1167801 ACAGTGTGCGACCGTCTTCGAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCTGGAG 1167742 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || |||||||| |||||| ||| || | |||| ||||| | ||| | Sbjct 1167741 GAATTCCTTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAA 1167682 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | || || || |||| |||||| |||||||||||||| Sbjct 1167681 CTTCCAATGTGATGGTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1167633 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || || || || ||||| || ||||| | ||| || || || Sbjct 1167613 ACCAAGTGCAAGGTCGATTCCTTCTGAATATTATAATCTGAGAGAGTACGGCCGTCTTCA 1167554 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || |||||||| |||| | | ||||||||| ||||| || || || ||||| | Sbjct 1167553 AGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGAGGGATTCCTTCTTTGTCCTGA 1167494 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| |||||| | |||| ||||| | |||| ||||| || | || | |||||| Sbjct 1167493 ATTTTAGCTTTAACATTCTCGATCGTGTCTGATGCT-TCGACTTCCAGAGTGATCGTTTT 1167435 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| |||||||||||||| Sbjct 1167434 ACCAGTAAGTGTTTTGACAAAAATCTGCAT 1167405 Score = 95.1 bits (104), Expect = 1e-14 Identities = 101/131 (77%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-G 118568 |||| ||||| | |||||| ||||| || | ||| || ||||| |||||||| ||||| | Sbjct 1166948 TACCACCGCGAAGTCTCAAAACCAAATGCAATGTGGATTCTTTCTGAATGTTATAATCAG 1166889 Query 118569 CTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGA 118628 | || ||||| ||| || || |||||||| || |||| | | ||||||||||||| Sbjct 1166888 ATAAT-GTGCGACCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGGA 1166830 Query 118629 GGTATGCCCTC 118639 || || ||||| Sbjct 1166829 GGAATACCCTC 1166819 >seq1104 Length=1074228 Score = 136 bits (150), Expect = 3e-27 Identities = 150/199 (75%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||| ||||||||||||||| | ||||||| |||||| |||||||| |||||| ||| Sbjct 391034 CTTTCTGAATGTTGTAATCGGAAAGAGTGCGCCCATCCTCCAGCTGTTTGCCAGCGAAGA 390975 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 |||| ||||| ||||| || || || ||||||||||| || || ||||| | | Sbjct 390974 TGAGCCGCTGTTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCT 390915 Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 118728 ||| |||||| | | ||| ||||| | ||| | || || || || || ||||| |||| Sbjct 390914 CGATGGTGTCGGAGGCCTCTACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTCACAA 390855 Query 118729 AAATCTGC---ATGGCTTA 118744 | |||||| |||||||| Sbjct 390854 AGATCTGCATAATGGCTTA 390836 >seq68007 Length=840 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||||||||| | || || || ||||||| |||||| || ||||| |||||||||||| Sbjct 468 ACCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGA 409 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||| | || || |||||||| || ||| |||| | |||||| ||||| || || Sbjct 408 AAGAGTCCTACCGTCTTCTAGCTGTTTCCCTGCGAAGATTAAACGCTGTTGATCAGGTGG 349 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCGA 118689 || || || || ||| ||||| ||| || | ||| | ||| |||| ||| || | Sbjct 348 GATTCCTTCTTTATCTTGTATTTTGGCTTTTACGTTTTCTATGGTATCCGAAGCT-TCAA 290 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | ||||||||||| ||||| || |||||||| ||||| Sbjct 289 CTTCAAGGGTAATTGTTTTGCCGGTGAGAGTCTTCACAAAAATTTGCAT 241 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | | || |||| || | ||| || || ||||||||||| || ||| Sbjct 239 CCTCCTCGAAGGCGCAGAACCAGATGAAGTGTTGATTCCTTTTGAATGTTATAGTCGGAA 180 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| | |||||| || ||||| ||||| | || | ||| || ||||| || || Sbjct 179 AGAGTTCTGCCATCCTCCAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGGA 120 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCGAC 118690 || ||||| ||||| ||||| || || | ||| | ||||| | ||| || || Sbjct 119 ATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCT-TCAAC 61 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || | ||| | ||||| || || ||||||||||| || ||||||||| || Sbjct 60 TTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTTACGAAGATCTGCATGCCT 9 >seq52431 Length=384 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | | ||| |||| || | ||| || || |||||||||||||| ||| Sbjct 304 CCTCCTCGAAGACGCAAAACCAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCGGAA 245 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| | |||||| || ||||| ||||| | || |||||||||||||| ||||| Sbjct 244 AGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGAGGA 185 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 || ||||| |||||| ||||| || || | ||| | ||||| | ||| || || Sbjct 184 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCT-TCAAC 126 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || | ||| | ||||| || || ||||| || || || ||||||||| || Sbjct 125 TTCAAGGGTGATGGTTTTACCCGTGAGAGTCTTCACGAAGATCTGCATGCCT 74 >seq5959 Length=1871824 Score = 89.7 bits (98), Expect = 4e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 118554 TGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGA 118613 ||||||||||| ||| | ||| | |||||| || ||||| ||||| | || ||| Sbjct 1420451 TGAATGTTGTAGTCGGAAAGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGA 1420510 Query 118614 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACG 118673 ||||||||||| ||||| || ||||| ||||| ||||| || || | ||| | Sbjct 1420511 CGCTGCTGATCTGGAGGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATT 1420570 Query 118674 GTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 118732 ||||| | ||| || || || | || | |||||||| || ||||| || ||||| || Sbjct 1420571 GTGTCTGAAGCT-TCAACTTCAAGAGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAGAT 1420629 Query 118733 CTGCAT 118738 ||||| Sbjct 1420630 TTGCAT 1420635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433462873933612