Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq68007 109 8e-19 seq5117 107 3e-18 seq52431 105 1e-17 seq514 102 1e-16 seq5959 89.7 8e-13 seq1390 87.8 3e-12 >seq68007 Length=840 Score = 109 bits (120), Expect = 8e-19 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 |||| |||| ||| | | |||| ||| | || ||||| ||| || || ||||| || Sbjct 241 TTCCTCCTCGAAGGCGCAGAACCAGATGAAGTGTTGATTCCTTTTGA-ATGTTATAGTCG 183 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 ||||||||||||| ||| || | |||||| |||||||||||||| | ||| ||||| || Sbjct 182 GAAAGAGTTCTGCCATCCTCCAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGG 123 Query 146168 GGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCT 146227 |||||||| ||||| || || || |||||| ||| Sbjct 122 GGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCA 63 Query 146228 ACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| || ||||| |||||||| || | ||||| | ||| || ||||| Sbjct 62 ACTTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTTACGAAGATCTGCAT 13 >seq5117 Length=2329582 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || || || ||||| || |||||||||||||| ||||| | || || || Sbjct 1165004 ACCAAGTGCAAGGTCGATTCCTTCTGAATATTATAATCTGAGAGAGTACGGCCGTCTTCA 1164945 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||| ||||||||||| ||||||||||| ||||||||||| || |||||||| || || Sbjct 1164944 AGTTGCTTTCCAGCAAAGATCAATCTTTGTTGATCCGGAGGGATGCCTTCTTTGTCCTG 1164886 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || || || ||||| || |||||||||||||| ||||| | || || || Sbjct 1167613 ACCAAGTGCAAGGTCGATTCCTTCTGAATATTATAATCTGAGAGAGTACGGCCGTCTTCA 1167554 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||| ||||||||||| ||||| || |||||||||||||| ||||||||||| || || Sbjct 1167553 AGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGAGGGATTCCTTCTTTGTCCTG 1167495 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 || || | ||| || || |||||||| | ||| ||||| ||| || || |||||||| || Sbjct 1167859 CCGCCACGAAGCCTCAAAACCAAATGCAGAGTGGATTCCTTTTGA-ATGTTATAATCAGA 1167801 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || || | | || || | ||||||||||||||| |||||||| || ||||| ||||| Sbjct 1167800 CAGTGTGCGACCGTCTTCGAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCTGGAGG 1167741 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| || || || Sbjct 1167740 AATTCCTTCCTTGTCCTG 1167723 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| |||||||||| | ||| | || | ||||||||||| ||||| || || | Sbjct 1168089 TTCCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGGATATTGTAGTCGG 1168030 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | ||||| | || || | ||| || ||||| ||||||| |||||| ||||| |||| Sbjct 1168029 ACAAAGTTCGTCCGTCCTCGAGTTGCTTGCCAGCGAAAATCAGTCTTTGTTGATCGGGAG 1167970 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| || ||||| ||||| Sbjct 1167969 GAATGCCCTCTTTGTCTTG 1167951 >seq52431 Length=384 Score = 105 bits (116), Expect = 1e-17 Identities = 109/140 (78%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 |||| |||| ||| | || |||| ||| | || ||||| ||| || || || || || Sbjct 306 TTCCTCCTCGAAGACGCAAAACCAGATGAAGTGTGGATTCCTTTTGA-ATGTTGTAGTCG 248 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 ||||||||||| | ||| || | |||||| ||||||||||||| | |||||||| ||| Sbjct 247 GAAAGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGA 188 Query 146168 GGAATTCCTTCTTTATCTTG 146187 |||||||| ||||| ||||| Sbjct 187 GGAATTCCCTCTTTGTCTTG 168 >seq514 Length=2723796 Score = 102 bits (112), Expect = 1e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 |||||||| || | |||||||| || |||||||| || || | || |||| ||| Sbjct 26497 AATACCAAGTGCAGCGTAGATTCCTTCTGGATATTATAGTCCGACAATGTCCTGCCATCT 26556 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCT 146176 || ||||| || |||||||||||||||||||||||||| || ||||||||| Sbjct 26557 TCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGATCTGGCGGAATTCCT 26607 >seq5959 Length=1871824 Score = 89.7 bits (98), Expect = 8e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| |||| ||| | || || | ||| | ||||| || || || || || || | Sbjct 1420635 TTCCTCCTCGAAGACGTAGAACTAGATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGG 1420694 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | |||||||| | ||| || | ||| ||||||||||| |||| | ||||||||| |||| Sbjct 1420695 AGAGAGTTCTTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGAG 1420754 Query 146169 GAATTCCTTCTTTATCTTG 146187 | || |||||||| ||||| Sbjct 1420755 GGATACCTTCTTTGTCTTG 1420773 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || || || || ||||||||||| | ||| || | |||||| ||||||||||||| | Sbjct 1420454 ATGTTGTAGTCGGAAAGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGACGC 1420513 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| ||||||||||| ||||| || || Sbjct 1420514 TGCTGATCTGGAGGAATTCCCTCTTTGTCCTG 1420545 >seq1390 Length=847142 Score = 87.8 bits (96), Expect = 3e-12 Identities = 124/173 (72%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 10524 AGAGGAAATGTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTTATAATAAATAGA 10583 || || ||||| || ||| || |||| ||||| ||| || |||||| ||| | || Sbjct 564252 AGTGGTAATGTTGGCGTAGTACTATTCAATCACAGTAACGAGGATTTTGAAAT---TGGA 564196 Query 10584 ---GGAGATAGAATATCTCAATTAATATGTGAAAAAATTTTATATCCTAAAATGTTAAAA 10640 || ||| | || ||||||||||||||||||| ||| |||||||||||| | || Sbjct 564195 CCTGGTGATCGTATTGCTCAATTAATATGTGAAAAGATTACATATCCTAAAATAGAAGAA 564136 Query 10641 GTCGATAGTTTATCAGAAACAAAAAGATCTGATTTTGGTTTTGGATCTACTGG 10693 || |||| ||| | | ||||| ||| ||| ||| |||||||| || || Sbjct 564135 GTTGATACCTTAACTAATACAAATAGAGGTGAAGATGGATTTGGATCAACGGG 564083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742880359205120