Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq5117 113 4e-20 seq1104 109 4e-19 seq5959 87.8 1e-12 seq52431 82.4 6e-11 >seq5117 Length=2329582 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45122 CTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG 45181 || || ||||| ||||| ||| ||||| |||||||| || || |||| |||| || Sbjct 1167847 CTCAAAACCAAATGCAGAGTGGATTCCTTTTGAATGTTATAATCAGACAGTGTGCGACCG 1167788 Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || || ||||||||||| || || ||||| | |||||| || ||||| | || |||||| Sbjct 1167787 TCTTCGAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATTCCTTCCTTG 1167728 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 ||| |||||| || || | | | |||| |||| || |||| || || Sbjct 1167727 TCCTGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAACTTCCAATGTGATG 1167668 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| ||||||| ||| || ||||| || ||||| Sbjct 1167667 GTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1167633 Score = 102 bits (112), Expect = 6e-17 Identities = 160/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCT-GAATGTTGTAGTCGTT 45168 ||||| | | ||| || || || || | ||| ||||||| |||| ||||| || Sbjct 1167175 CCACCGCGAAGTCTCAAAACTAAATGTAACGTAGATTCCTTCTTGAATATTGTAATCAGA 1167116 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || | ||| |||| || |||||||||||||| || ||||| | ||| || |||||||| Sbjct 1167115 CAATGTGCGTCCGTCTTCGAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGG 1167056 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||| ||||| |||||| ||| || | | | |||| | |||| || Sbjct 1167055 AATACCCTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGAC 1166996 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || || || ||||| || ||||| || || || || ||||| Sbjct 1166995 CTCCAATGTGATAGTTTTGCCAGTGAGAGTTTTGACGAAAATCTGCAT 1166948 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | | ||| || ||||| |||| ||| || || ||||| ||||| || | Sbjct 1167403 CCACCGCGAAGTCTCAAAACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGAC 1167344 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | | ||| |||| || || ||||||||||| || ||||| | |||||| |||||||| Sbjct 1167343 AATGTGCGTCCGTCTTCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGATCGGGAGGA 1167284 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || ||||| |||||| ||| || | | | |||| | |||| ||| Sbjct 1167283 ATACCTTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACC 1167224 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || ||||| || || | ||| || || || || ||||| Sbjct 1167223 TCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 1167177 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCG--TTCAGTT-GGCGATCGTCG 45184 ||||| |||| || || |||||||||||||| || | |||| ||| ||| ||| Sbjct 1165232 ACCAAATGCAATGTTGATTCTTTCTGAATGTTGTAATCAGATAGAGTTCGGCCATCTTCG 1165173 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || |||||||||||||| ||||||| ||| || || ||||| | || ||||| ||| Sbjct 1165172 ---AGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCCTTATCC 1165116 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 |||||| || || | | | |||| |||| || |||| || || ||| Sbjct 1165115 TGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAACTTCCAATGTGATGGTC 1165056 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||||| ||| || ||||| || ||||| Sbjct 1165055 TTTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1165024 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||| ||| | | |||||||||| || ||||||||||| || || || Sbjct 1165022 CCACCTCGCAAACGGAGAACCAAGTGCAAGGTCGATTCCTTCTGAATATTATAATCTGAG 1164963 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || |||| || ||||| ||||| || || ||||| | ||||| || ||||| Sbjct 1164962 AGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGATCCGGAGGG 1164903 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || |||||| |||||| || || | | | ||||| | | || ||| Sbjct 1164902 ATGCCTTCTTTGTCCTGAATTTTCGCTTTGACGTTCTCGATCGTGTCCGAAGCTTCTACC 1164843 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||||| ||||| ||||||| || || || ||||| ||||| Sbjct 1164842 TCCAAAGTAATTGTCTTTCCCGTCAAGGTTTTAACGAAGATCTGCAT 1164796 >seq1104 Length=1074228 Score = 109 bits (120), Expect = 4e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 45149 TTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATC 45208 |||||||||||||| ||| || ||| | || ||||| ||||| || ||||| || Sbjct 391032 TTCTGAATGTTGTAATCGGAAAGAGTGCGCCCATCCTCCAGCTGTTTGCCAGCGAAGATG 390973 Query 45209 AACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCC 45268 | ||||||||| || || || | |||||||||||| || || |||||| | | Sbjct 390972 AGCCGCTGTTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCG 390913 Query 45269 ACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAG 45328 | | |||| |||| ||||| | |||||| ||||| ||||| || || ||||||||| Sbjct 390912 ATGGTGTCGGAGGCCTCTACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTCACAAAG 390853 Query 45329 ATTTGCAT 45336 || ||||| Sbjct 390852 ATCTGCAT 390845 >seq5959 Length=1871824 Score = 87.8 bits (96), Expect = 1e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 45151 CTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAA 45210 |||||||||||||||| || | | | || || |||||||| || || || |||| Sbjct 1420450 CTGAATGTTGTAGTCGGAAAGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAG 1420509 Query 45211 CCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCAC 45270 ||||| || || ||||| | ||||| |||||| ||||| ||| || | | Sbjct 1420510 ACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTAT 1420569 Query 45271 GCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGAT 45330 |||| | | || || || | ||||| || ||||| || ||||||||||||||||| Sbjct 1420570 TGTGTCTGAAGCTTCAACTTCAAGAGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAGAT 1420629 Query 45331 TTGCAT 45336 |||||| Sbjct 1420630 TTGCAT 1420635 >seq52431 Length=384 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||| || || ||| ||||| ||||||||||||||| || | | | || Sbjct 289 AAAACCAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCGGAAAGAGTTCTACCATCC 230 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || |||||||| || || || |||| ||||| || || ||||| | ||||| ||||| Sbjct 229 TCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCT 170 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| ||| || | | |||| | | || || || | ||| || || Sbjct 169 TGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGGGTGATGGTT 110 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| ||||||||||| ||||| |||||| Sbjct 109 TTACCCGTGAGAGTCTTCACGAAGATCTGCATG 77 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394740505994731