Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08]
69,511 sequences; 396,024,718 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq5117 113 4e-20
seq1104 109 4e-19
seq5959 87.8 1e-12
seq52431 82.4 6e-11
>seq5117
Length=2329582
Score = 113 bits (124), Expect = 4e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 45122 CTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG 45181
|| || ||||| ||||| ||| ||||| |||||||| || || |||| |||| ||
Sbjct 1167847 CTCAAAACCAAATGCAGAGTGGATTCCTTTTGAATGTTATAATCAGACAGTGTGCGACCG 1167788
Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241
|| || ||||||||||| || || ||||| | |||||| || ||||| | || ||||||
Sbjct 1167787 TCTTCGAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATTCCTTCCTTG 1167728
Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301
||| |||||| || || | | | |||| |||| || |||| || ||
Sbjct 1167727 TCCTGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAACTTCCAATGTGATG 1167668
Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||||| ||||||| ||| || ||||| || |||||
Sbjct 1167667 GTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1167633
Score = 102 bits (112), Expect = 6e-17
Identities = 160/228 (70%), Gaps = 1/228 (0%)
Strand=Plus/Minus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCT-GAATGTTGTAGTCGTT 45168
||||| | | ||| || || || || | ||| ||||||| |||| ||||| ||
Sbjct 1167175 CCACCGCGAAGTCTCAAAACTAAATGTAACGTAGATTCCTTCTTGAATATTGTAATCAGA 1167116
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
|| | ||| |||| || |||||||||||||| || ||||| | ||| || ||||||||
Sbjct 1167115 CAATGTGCGTCCGTCTTCGAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGG 1167056
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288
| |||||| ||||| |||||| ||| || | | | |||| | |||| ||
Sbjct 1167055 AATACCCTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGAC 1166996
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||||| || || || ||||| || ||||| || || || || |||||
Sbjct 1166995 CTCCAATGTGATAGTTTTGCCAGTGAGAGTTTTGACGAAAATCTGCAT 1166948
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
||||| | | ||| || ||||| |||| ||| || || ||||| ||||| || |
Sbjct 1167403 CCACCGCGAAGTCTCAAAACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGAC 1167344
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
| | ||| |||| || || ||||||||||| || ||||| | |||||| ||||||||
Sbjct 1167343 AATGTGCGTCCGTCTTCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGATCGGGAGGA 1167284
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| ||| || ||||| |||||| ||| || | | | |||| | |||| |||
Sbjct 1167283 ATACCTTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACC 1167224
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||| || || ||||| || || | ||| || || || || |||||
Sbjct 1167223 TCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 1167177
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/212 (70%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCG--TTCAGTT-GGCGATCGTCG 45184
||||| |||| || || |||||||||||||| || | |||| ||| ||| |||
Sbjct 1165232 ACCAAATGCAATGTTGATTCTTTCTGAATGTTGTAATCAGATAGAGTTCGGCCATCTTCG 1165173
Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244
|| |||||||||||||| ||||||| ||| || || ||||| | || ||||| |||
Sbjct 1165172 ---AGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCCTTATCC 1165116
Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304
|||||| || || | | | |||| |||| || |||| || || |||
Sbjct 1165115 TGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAACTTCCAATGTGATGGTC 1165056
Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| ||||||| ||| || ||||| || |||||
Sbjct 1165055 TTTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1165024
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
||||||| ||| | | |||||||||| || ||||||||||| || || ||
Sbjct 1165022 CCACCTCGCAAACGGAGAACCAAGTGCAAGGTCGATTCCTTCTGAATATTATAATCTGAG 1164963
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| || |||| || ||||| ||||| || || ||||| | ||||| || |||||
Sbjct 1164962 AGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGATCCGGAGGG 1164903
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| || || |||||| |||||| || || | | | ||||| | | || |||
Sbjct 1164902 ATGCCTTCTTTGTCCTGAATTTTCGCTTTGACGTTCTCGATCGTGTCCGAAGCTTCTACC 1164843
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||| ||||| ||||| ||||||| || || || ||||| |||||
Sbjct 1164842 TCCAAAGTAATTGTCTTTCCCGTCAAGGTTTTAACGAAGATCTGCAT 1164796
>seq1104
Length=1074228
Score = 109 bits (120), Expect = 4e-19
Identities = 137/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 45149 TTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATC 45208
|||||||||||||| ||| || ||| | || ||||| ||||| || ||||| ||
Sbjct 391032 TTCTGAATGTTGTAATCGGAAAGAGTGCGCCCATCCTCCAGCTGTTTGCCAGCGAAGATG 390973
Query 45209 AACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCC 45268
| ||||||||| || || || | |||||||||||| || || |||||| | |
Sbjct 390972 AGCCGCTGTTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCG 390913
Query 45269 ACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAG 45328
| | |||| |||| ||||| | |||||| ||||| ||||| || || |||||||||
Sbjct 390912 ATGGTGTCGGAGGCCTCTACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTCACAAAG 390853
Query 45329 ATTTGCAT 45336
|| |||||
Sbjct 390852 ATCTGCAT 390845
>seq5959
Length=1871824
Score = 87.8 bits (96), Expect = 1e-12
Identities = 131/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 45151 CTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAA 45210
|||||||||||||||| || | | | || || |||||||| || || || ||||
Sbjct 1420450 CTGAATGTTGTAGTCGGAAAGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAG 1420509
Query 45211 CCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCAC 45270
||||| || || ||||| | ||||| |||||| ||||| ||| || | |
Sbjct 1420510 ACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTAT 1420569
Query 45271 GCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGAT 45330
|||| | | || || || | ||||| || ||||| || |||||||||||||||||
Sbjct 1420570 TGTGTCTGAAGCTTCAACTTCAAGAGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAGAT 1420629
Query 45331 TTGCAT 45336
||||||
Sbjct 1420630 TTGCAT 1420635
>seq52431
Length=384
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184
|| |||| || || ||| ||||| ||||||||||||||| || | | | ||
Sbjct 289 AAAACCAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCGGAAAGAGTTCTACCATCC 230
Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244
|| |||||||| || || || |||| ||||| || || ||||| | ||||| |||||
Sbjct 229 TCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCT 170
Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304
||||| ||| || | | |||| | | || || || | ||| || ||
Sbjct 169 TGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGGGTGATGGTT 110
Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| ||||| ||||||||||| ||||| ||||||
Sbjct 109 TTACCCGTGAGAGTCTTCACGAAGATCTGCATG 77
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 394740505994731
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |