Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08]
69,511 sequences; 396,024,718 total letters
Query= NC_003094.2
Length=130759
Score E
Sequences producing significant alignments: (Bits) Value
seq68007 87.8 2e-12
seq5959 87.8 2e-12
seq5117 87.8 2e-12
>seq68007
Length=840
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891
||||| || ||||| || || | ||||||||||| || ||| | || || ||| |
Sbjct 241 ATGCAAATTTTTGTGAAGACTCTCACCGGCAAAACAATTACCCTTGAAGTTGAAGCTTCG 300
Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951
|| | |||||| || || | ||||| | |||||||| | || ||| ||
Sbjct 301 GATACCATAGAAAACGTAAAAGCCAAAATACAAGATAAAGAAGGAATCCCACCTGATCAA 360
Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011
|| |||||||| | || || ||||| || ||||| | |||| | |||||||| |
Sbjct 361 CAGCGTTTAATCTTCGCAGGGAAACAGCTAGAAGACGGTAGGACTCTTTCCGATTACAAC 420
Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059
|| || || || | || || || ||||| |||||| | |||||||||
Sbjct 421 ATCCAAAAGGAATCTACACTCCACTTAGTTTTACGACTTCGCGGAGGT 468
>seq5959
Length=1871824
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 24828 CATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATC 24887
||||||||| || ||||| |||||| | || || ||||| || || | || || ||| |
Sbjct 1420867 CATCATGCAAATCTTTGTGAAAACCCTCACTGGAAAAACCATCACTCTTGAGGTGGAAGC 1420808
Query 24888 GAGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGA 24947
|| | | |||| | ||| || | || || | |||||||| | || ||
Sbjct 1420807 TTCTGATACTATAGAGAATGTCAAAGCTAAGATCCAAGACAAAGAAGGTATCCCTCCAGA 1420748
Query 24948 CCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTA 25007
||||||||| | || | ||| || || |||||||||||| | ||| | ||| ||
Sbjct 1420747 TCAGCAACGTCTGATCTTTGCTGGAAAGCAACTGGAAGATGGAAGAACTCTCTCCGACTA 1420688
Query 25008 CAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058
|| ||| ||||| ||| | || |||||| |||| |||| | || |||||
Sbjct 1420687 CAACATCCAGAAGGAGTCTACACTTCATCTAGTTCTACGTCTTCGAGGAGG 1420637
>seq5117
Length=2329582
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 24828 CATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATC 24887
|| ||||||||| ||||| || || || ||||| || || |||||| |||| ||||| |
Sbjct 1164564 CACCATGCAGATTTTTGTAAAGACGTTGACCGGAAAGACCATAACCCTCGAGGTCGAGGC 1164623
Query 24888 GAGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGA 24947
||||| | | || | || |||| ||| ||| | || |||||| | || |||
Sbjct 1164624 TTCCGACACTATTGAGAACGTAAAGGCAAAGATTCAGGACAAGGAAGGCATCCCACCTGA 1164683
Query 24948 CCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTA 25007
|||||||||||| || | || || || || || ||||| || || || ||
Sbjct 1164684 CCAGCAACGTTTGATCTTCGCTGGAAAGCAGCTTGAAGACGGACGCACCTTGTCTGACTA 1164743
Query 25008 CAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058
|| || ||||| || | || ||||| || || | |||||||||| ||
Sbjct 1164744 CAATATCCAGAAGGAATCAACCCTTCACTTGGTTCTCAGATTGCGCGGCGG 1164794
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 417949627361120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |