Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5686 104 3e-17 seq2744 87.8 2e-12 seq4102 86.0 8e-12 >seq5686 Length=2262380 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 ||||||| | || |||||||||||||| || || |||||||| ||||| || |||| | Sbjct 1101220 CACTAAAGACCTTCTTTGTTTCCTTGTGCAGGTTGGATATGGCAATTCTAGCTGCTAAAG 1101279 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 | |||||||| |||||||| | | ||| || || |||| ||||||| | |||| Sbjct 1101280 TTGCATAATCTGGATGTTGATTGATCATAGTCGCCGCAGTTTCAGCTGCCAAGTTATCCA 1101339 Query 64126 ATTCTACCGTTGTTACTCCA 64145 |||| | |||||| |||||| Sbjct 1101340 ATTCGATCGTTGTCACTCCA 1101359 Score = 95.1 bits (104), Expect = 2e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 62622 CCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCA 62681 ||| |||||| ||||| || |||| || ||||| || ||||| || ||||| || Sbjct 1099430 CCTTCATATGACTCATAAGGACCTTTCTCAATAGCTATTTCGCAACTTGCTTCTAAAGCG 1099489 Query 62682 CCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAAT 62741 || ||||||| |||||||| || | | || || || | ||||| ||| |||||| Sbjct 1099490 CCATAATAAAGAGTTTCAAAAATTTGGATGTTGAGTTCCTTAGCTTCGTCGCTTTCAAAT 1099549 Query 62742 GGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62791 ||||| | | | || ||||| || ||||||||||| |||| |||||| Sbjct 1099550 GGATACCTCATTAAGATCAACGCATCTGCTAATCCTTGTACACTAATACC 1099599 >seq2744 Length=396707 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 |||||||| | |||||||| || || | |||||||||||||| | |||||| ||| || Sbjct 260280 ACTTCTTCTATGGTCCAAAAAGAGGCTACAGCCTTTTTATACATCTCCCAGATATCAGGA 260221 Query 34140 TATTGGATTGGGAAAATAACAAATCTATTTGGA 34172 ||||| || || ||||| ||||| | ||||||| Sbjct 260220 TATTGAATAGGAAAAATTACAAAACGATTTGGA 260188 >seq4102 Length=4342353 Score = 86.0 bits (94), Expect = 8e-12 Identities = 164/240 (68%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 62331 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACT 62390 || || || | |||||| ||| | || || ||| || |||||||| || || | Sbjct 713418 ATGTCTTCGTCCCATAAACCTCTGGCAGTCAAGTCTCGCAGTAGATGCGGATTGACGATG 713359 Query 62391 TGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62450 || |||||||||||||| | || ||| ||||| || || |||||||| | || Sbjct 713358 ACAAACTCTCCAGACAATACGCGCCTCACGTAGATATTGCTCGTGTACGGTTCAATAGAT 713299 Query 62451 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62510 || ||||| || ||||| || || || || || || ||||||||||| | || | | Sbjct 713298 TCGTTATTCCCTAAAATCTGCGCTGTCGAGGCCGTTGGCATAGGTGCTATTAAAAGTGAA 713239 Query 62511 TTTCTAAGACCGTATGTTC--TGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCG 62568 ||||| | ||| || || ||| || |||| | | ||||||||||| | ||||| Sbjct 713238 TTTCTCACTCCG--TGCTCCGCGATCTTCGCTTTCAATTCATCCCAATTCCATAAATCCG 713181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629270359360080