Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4102 107 2e-18 seq2744 96.9 3e-15 >seq4102 Length=4342353 Score = 107 bits (118), Expect = 2e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 38419 GCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTT 38478 ||||| |||| || || || |||||| | || || ||| ||||||||||| || ||| Sbjct 711645 GCGTTGAATAGCGTTGGTGAAGCATGTGTAAAATATCGTTCAGACAAATAATTGTACGTT 711586 Query 38479 TCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGT 38538 ||||| || | || || || |||||||||| | || ||| ||||| | ||||||| Sbjct 711585 TCTATAACTTTGTCAATGTCGTTTTCGTGAATACCAACAGCTACTCTCATCAACATATGT 711526 Query 38539 TGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTT 38598 || || || || | ||| || ||| ||| || ||||| | |||| | ||||| Sbjct 711525 TGAGGCCTCTCAACTATCTTGCCATTGATTTTCAGCAGATAGCTTCTTTCGAGCGTTTTG 711466 Query 38599 ATTCCAAAATAACTATATGAATAATCTCTATCGTATGCTATTACATTATCGATTATATC 38657 | |||| |||| |||| | |||||| ||||||| ||| || ||| | | |||| Sbjct 711465 AAACCAATATAATTATAACTAAAATCTCGATCGTATATTATAGCAGAATCTAGTCTATC 711407 Score = 86.0 bits (94), Expect = 6e-12 Identities = 87/112 (78%), Gaps = 1/112 (1%) Strand=Plus/Minus Query 38097 TCTTAAGCTTAGAAAAT-CGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTG 38155 ||||||| | ||||| |||| |||||||| ||||||||||||| |||||| | | || Sbjct 712085 TCTTAAGTTCCAAAAATTCGAAAATATCAGCATGCCATGGTTCTAAATAAATAGCAAATG 712026 Query 38156 CTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATA 38207 ||||||||| ||| | |||||||||| || ||| | || | | |||||| Sbjct 712025 CTCCTGGTCGTTTGTTTCCTCCCTGATCAACATAAACAGCTATTTCATTATA 711974 >seq2744 Length=396707 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 11432 ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGAC 11491 ||||||||| | ||||| | || ||||| |||||||||||||| ||||| | || Sbjct 261390 ACTTTTTCAAATCCTAATGCAACGAACAATCTGTCTGCGACGAATTCAATATAATTGCAC 261331 Query 11492 ATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTT 11551 || | | |||||||| ||||| || || || || | || || ||||| |||||| Sbjct 261330 ATAAGTGAGCAATTCATGCCTATCAGCTCGACTGGCAACGCTTGCGTTAAAAATTCCTTT 261271 Query 11552 TCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAAT 11611 || || | || || || || || || || ||| | ||| || || |||| Sbjct 261270 TCGATTTCCACAGCGTCCATTATGATTGATTTTACATGTTCAAACGACGGCTTTTGTATG 261211 Query 11612 AAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACC 11652 | |||||||| |||||||| || |||||||| ||||| || Sbjct 261210 ATGTGTTTAAATATTAAACATGCGAAATCACAGTGTAATCC 261170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468117704657840