Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5117 120 3e-22 seq52431 107 2e-18 seq5959 107 2e-18 seq68007 100 3e-16 seq2744 84.2 2e-11 >seq5117 Length=2329582 Score = 120 bits (132), Expect = 3e-22 Identities = 157/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| || || | || || ||||||||||| || ||||| || ||||| ||| Sbjct 1167389 CAAAACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGACAATGTGCGTCCGTC 1167330 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 |||||||||||| || ||| |||||| | || ||||||||||| || ||||||||||| Sbjct 1167329 TTCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTGTC 1167270 Query 139672 GGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| |||| | || | | || | |||||| | | ||| ||||| | || | | Sbjct 1167269 -TTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGATGG 1167211 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || || || ||||| ||||| || |||||| Sbjct 1167210 TCTTTCCTGTTAAAGTTTTGACGAAAATCTGCATA 1167176 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || || | | ||| ||||||| || || || || || || || || || | Sbjct 1164794 CCGCCGCGCAATCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGAC 1164735 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| ||||| || ||||| |||||| ||||||||| || || || Sbjct 1164734 AAGGTGCGTCCGTCTTCAAGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCAGGTGGG 1164675 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| | |||| |||| | || | ||||||| | ||| || Sbjct 1164674 ATGCCTTCCTTGTCC-TGAATCTTTGCCTTTACGTTCTCAATAGTGTCGGAAGCCTCGAC 1164616 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||| ||||||||||| ||||| || || ||||| Sbjct 1164615 CTCGAGGGTTATGGTCTTTCCGGTCAACGTCTTTACAAAAATCTGCAT 1164568 Score = 113 bits (124), Expect = 4e-20 Identities = 157/216 (73%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTT-TTGAATGTTATAATCGCTCATTGTGCTCGAGT 139610 ||||||||| || | |||||| || || |||||| || ||||| || ||||| || Sbjct 1167161 CAAAACTAAATGTAACGTAGATTCCTTCTTGAATATTGTAATCAGACAATGTGCGTCCGT 1167102 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 ||||||| ||||| || ||| |||||| | |||||||||||||| || || ||||||| Sbjct 1167101 CTTCGAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGAATACCCTCTTTGT 1167042 Query 139671 CGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 | ||| |||| | || | | || | |||||| | | ||| ||||| | || | Sbjct 1167041 C-TTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGATA 1166983 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || ||||| || | ||||| ||||| || |||||| Sbjct 1166982 GTTTTGCCAGTGAGAGTTTTGACGAAAATCTGCATA 1166947 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | | |||||| || || | || || || ||||||||||||||||| | Sbjct 1167859 CCGCCACGAAGCCTCAAAACCAAATGCAGAGTGGATTCCTTTTGAATGTTATAATCAGAC 1167800 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| ||||||||| ||||| |||||| |||||| | || ||||| ||||| Sbjct 1167799 AGTGTGCGACCGTCTTCGAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCTGGAGGA 1167740 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| |||| | ||| | | || | ||||| | | ||| || Sbjct 1167739 ATTCCTTCCTTGTC-CTGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAAC 1167681 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || ||||| ||||| || || || |||||| Sbjct 1167680 TTCCAATGTGATGGTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCATA 1167632 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| ||||| | ||| ||||| | || || || || ||||| |||||||| Sbjct 1165022 CCACCTCGCAAACGGAGAACCAAGTGCAAGGTCGATTCCTTCTGAATATTATAATCTGAG 1164963 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| || || || |||||| |||||| | ||| ||||| ||||| Sbjct 1164962 AGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGATCCGGAGGG 1164903 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| ||| |||| | ||| | | || | ||||| | | || || Sbjct 1164902 ATGCCTTCTTTGTC-CTGAATTTTCGCTTTGACGTTCTCGATCGTGTCCGAAGCTTCTAC 1164844 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||| || ||||| ||||| ||||| || ||||| Sbjct 1164843 CTCCAAAGTAATTGTCTTTCCCGTCAAGGTTTTAACGAAGATCTGCAT 1164796 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 139531 GACATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATA 139590 ||||| ||||||| | || | || | ||||| ||||| ||||| || || || || Sbjct 1168094 GACATTTCCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGGATATTGTA 1168035 Query 139591 ATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATC 139650 ||| || || | ||| ||||| || || ||||| | ||||| | ||| ||||| Sbjct 1168034 GTCGGACAAAGTTCGTCCGTCCTCGAGTTGCTTGCCAGCGAAAATCAGTCTTTGTTGATC 1167975 Query 139651 GGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGG 139709 |||||| ||||| |||||||| ||| |||||| ||||| | || | ||||| | | Sbjct 1167974 GGGAGGAATGCCCTCTTTGTC-TTGAATTTTTGCTTTTACATTCTCGATCGTGTCCGAAG 1167916 Query 139710 GCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| ||||| | || | || || || || | || || || ||||| |||||| Sbjct 1167915 CCTCGACCTCCAGTGTGATAGTTTTCCCAGTGAGAGTCTTGACAAATATCTGCATA 1167860 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||||||| | ||| || || | || || ||||| |||||||| ||||| Sbjct 1165250 CCACCACGTAAACGGAGAACCAAATGCAATGTTGATTCTTTCTGAATGTTGTAATCAG-- 1165193 Query 139598 ATTGTGCTCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || | | ||| |||||||||||||| || || |||||| | |||||||| |||| Sbjct 1165192 ATAGAGTTCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAG 1165133 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 | || ||||| || || ||| |||| | ||| | | || | ||||| | | ||| Sbjct 1165132 GGATTCCTTCCTTATC-CTGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCA 1165074 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || | || | ||||| || ||||| ||||| || || || |||||| Sbjct 1165073 ACTTCCAATGTGATGGTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCATA 1165023 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| ||||| | ||| ||||| | || || || || ||||| |||||||| Sbjct 1167631 CCACCTCGCAAACGGAGAACCAAGTGCAAGGTCGATTCCTTCTGAATATTATAATCTGAG 1167572 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| || || || |||||| |||||| | |||||||| ||||| Sbjct 1167571 AGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGAGGG 1167512 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||| | |||| | | || | ||||| | | || || Sbjct 1167511 ATTCCTTCTTTGTC-CTGAATTTTAGCTTTAACATTCTCGATCGTGTCTGATGCTTCGAC 1167453 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||| || || || | ||||| || || || |||||| Sbjct 1167452 TTCCAGAGTGATCGTTTTACCAGTAAGTGTTTTGACAAAAATCTGCATA 1167404 >seq52431 Length=384 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||||||||| | |||| || || || ||||||||||| || ||| Sbjct 304 CCTCCTCGAAGACGCAAAACCAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCGGAA 245 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || || || || |||||||||||| | |||||||| |||||||| ||||| Sbjct 244 AGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGAGGA 185 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || |||||||| |||||| || | | ||| | |||||| | | || || Sbjct 184 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAACT 125 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | || || || || | || || ||||| || ||||| Sbjct 124 TCAAGGGTGATGGTTTTACCCGTGAGAGTCTTCACGAAGATCTGCAT 78 >seq5959 Length=1871824 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | ||||| |||| |||||||| || || ||||| || ||| Sbjct 1420637 CCTCCTCGAAGACGTAGAACTAGATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAG 1420696 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| || || || |||||| ||||||||||||||||||| ||||| Sbjct 1420697 AGAGTTCTTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGAGGG 1420756 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| || ||| | | || | || || | | |||||| Sbjct 1420757 ATACCTTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTATCAGAAGCTTCCACC 1420816 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | || || || || | ||||| || || |||||||| Sbjct 1420817 TCAAGAGTGATGGTTTTTCCAGTGAGGGTTTTCACAAAGATTTGCAT 1420863 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || || |||||||||||| | |||||||| |||||||| ||||| || || |||||| Sbjct 1420481 TCCTCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGAGGAATTCCCTCTTTG 1420540 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || |||||| || | | ||| | |||||| | | || || |||| || | Sbjct 1420541 TCCTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGAGTAATG 1420600 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| || | || || || || |||||||| Sbjct 1420601 GTTTTGCCAGTAAGAGTCTTCACAAAGATTTGCAT 1420635 >seq68007 Length=840 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 || ||||||||||| | ||||| || ||||| ||||| |||||| | || || | Sbjct 455 CGTAAAACTAAGTGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTCCTACCG 396 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| |||||||| || || |||| | ||| || ||||| || || || |||||||| Sbjct 395 TCTTCTAGCTGTTTCCCTGCGAAGATTAAACGCTGTTGATCAGGTGGGATTCCTTCTTTA 336 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||||| ||||| | ||| | || || | | || || |||| ||| | Sbjct 335 TCTTGTATTTTGGCTTTTACGTTTTCTATGGTATCCGAAGCTTCAACTTCAAGGGTAATT 276 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || |||||||| | || || || || |||||||| Sbjct 275 GTTTTGCCGGTGAGAGTCTTCACAAAAATTTGCAT 241 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | |||| ||| | |||| || || || |||||||||||||| ||| Sbjct 239 CCTCCTCGAAGGCGCAGAACCAGATGAAGTGTTGATTCCTTTTGAATGTTATAGTCGGAA 180 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || || || || ||||| |||||| | |||| |||||| ||||| || || Sbjct 179 AGAGTTCTGCCATCCTCCAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGGA 120 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || |||||||| |||||| || | | ||| | |||||| | | || || Sbjct 119 ATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAACT 60 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | || || || || | ||||||||||| || ||||| Sbjct 59 TCAAGGGTGATGGTTTTACCCGTAAGAGTTTTTACGAAGATCTGCAT 13 >seq2744 Length=396707 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 52550 TTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCA 52609 |||||||||| | || || | | ||||||||||| ||||| | | || | || | Sbjct 260824 TTCCGTGTGTAGGGAAGAAAGCCAAGTGGGCATTGAACTGGATTAATCATGAGAGTGCTA 260883 Query 52610 CTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTT 52669 | ||| | |||||| | |||| || || ||| || ||| | ||||| || |||| Sbjct 260884 CATTTCCAGAACGTGTAATCGCATTCGCGGCAGTCGAGGGTATTTTTTTCAGCGGCAGTT 260943 Query 52670 TTGCGGCAATATTTTACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACG 52729 ||||||| || |||| | || | || | ||||| |||||||| |||||||||| Sbjct 260944 TTGCGGCTATCTTTTGGCTGAAGAAACGAGGAGTCATGCCAGGCCTCACTTTTAGCAACG 261003 Query 52730 AGTTGATATCGCGCGACGAAG 52750 | | || || || ||||||| Sbjct 261004 AACTCATCTCACGAGACGAAG 261024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495632976191200