Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08]
69,511 sequences; 396,024,718 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq5117 120 3e-22
seq52431 107 2e-18
seq5959 107 2e-18
seq68007 100 3e-16
seq2744 84.2 2e-11
>seq5117
Length=2329582
Score = 120 bits (132), Expect = 3e-22
Identities = 157/215 (73%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611
|||||| || || | || || ||||||||||| || ||||| || ||||| |||
Sbjct 1167389 CAAAACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGACAATGTGCGTCCGTC 1167330
Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671
|||||||||||| || ||| |||||| | || ||||||||||| || |||||||||||
Sbjct 1167329 TTCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTGTC 1167270
Query 139672 GGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730
||| |||| | || | | || | |||||| | | ||| ||||| | || | |
Sbjct 1167269 -TTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGATGG 1167211
Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||| || || || ||||| ||||| || ||||||
Sbjct 1167210 TCTTTCCTGTTAAAGTTTTGACGAAAATCTGCATA 1167176
Score = 116 bits (128), Expect = 4e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
||||| || || | | ||| ||||||| || || || || || || || || || |
Sbjct 1164794 CCGCCGCGCAATCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGAC 1164735
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| |||||| ||||| || ||||| |||||| ||||||||| || || ||
Sbjct 1164734 AAGGTGCGTCCGTCTTCAAGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCAGGTGGG 1164675
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|||||||| ||||| ||| | |||| |||| | || | ||||||| | ||| ||
Sbjct 1164674 ATGCCTTCCTTGTCC-TGAATCTTTGCCTTTACGTTCTCAATAGTGTCGGAAGCCTCGAC 1164616
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | ||| | ||||| ||||||||||| ||||| || || |||||
Sbjct 1164615 CTCGAGGGTTATGGTCTTTCCGGTCAACGTCTTTACAAAAATCTGCAT 1164568
Score = 113 bits (124), Expect = 4e-20
Identities = 157/216 (73%), Gaps = 3/216 (1%)
Strand=Plus/Minus
Query 139552 CAAAACTAAGTGAATCGTAGACTCTTT-TTGAATGTTATAATCGCTCATTGTGCTCGAGT 139610
||||||||| || | |||||| || || |||||| || ||||| || ||||| ||
Sbjct 1167161 CAAAACTAAATGTAACGTAGATTCCTTCTTGAATATTGTAATCAGACAATGTGCGTCCGT 1167102
Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670
||||||| ||||| || ||| |||||| | |||||||||||||| || || |||||||
Sbjct 1167101 CTTCGAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGAATACCCTCTTTGT 1167042
Query 139671 CGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
| ||| |||| | || | | || | |||||| | | ||| ||||| | || |
Sbjct 1167041 C-TTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGATA 1166983
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|| ||||| || | ||||| ||||| || ||||||
Sbjct 1166982 GTTTTGCCAGTGAGAGTTTTGACGAAAATCTGCATA 1166947
Score = 113 bits (124), Expect = 4e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
||||| || | | |||||| || || | || || || ||||||||||||||||| |
Sbjct 1167859 CCGCCACGAAGCCTCAAAACCAAATGCAGAGTGGATTCCTTTTGAATGTTATAATCAGAC 1167800
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| ||||| ||||||||| ||||| |||||| |||||| | || ||||| |||||
Sbjct 1167799 AGTGTGCGACCGTCTTCGAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCTGGAGGA 1167740
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| ||||| ||| |||| | ||| | | || | ||||| | | ||| ||
Sbjct 1167739 ATTCCTTCCTTGTC-CTGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAAC 1167681
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|| | || | ||||| || ||||| ||||| || || || ||||||
Sbjct 1167680 TTCCAATGTGATGGTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCATA 1167632
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| ||||| ||||| | ||| ||||| | || || || || ||||| ||||||||
Sbjct 1165022 CCACCTCGCAAACGGAGAACCAAGTGCAAGGTCGATTCCTTCTGAATATTATAATCTGAG 1164963
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || | |||||| || || || |||||| |||||| | ||| ||||| |||||
Sbjct 1164962 AGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGATCCGGAGGG 1164903
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|||||||||||||| ||| |||| | ||| | | || | ||||| | | || ||
Sbjct 1164902 ATGCCTTCTTTGTC-CTGAATTTTCGCTTTGACGTTCTCGATCGTGTCCGAAGCTTCTAC 1164844
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | || | ||||| || ||||| ||||| ||||| || |||||
Sbjct 1164843 CTCCAAAGTAATTGTCTTTCCCGTCAAGGTTTTAACGAAGATCTGCAT 1164796
Score = 95.1 bits (104), Expect = 1e-14
Identities = 164/236 (69%), Gaps = 2/236 (1%)
Strand=Plus/Minus
Query 139531 GACATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATA 139590
||||| ||||||| | || | || | ||||| ||||| ||||| || || || ||
Sbjct 1168094 GACATTTCCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGGATATTGTA 1168035
Query 139591 ATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATC 139650
||| || || | ||| ||||| || || ||||| | ||||| | ||| |||||
Sbjct 1168034 GTCGGACAAAGTTCGTCCGTCCTCGAGTTGCTTGCCAGCGAAAATCAGTCTTTGTTGATC 1167975
Query 139651 GGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGG 139709
|||||| ||||| |||||||| ||| |||||| ||||| | || | ||||| | |
Sbjct 1167974 GGGAGGAATGCCCTCTTTGTC-TTGAATTTTTGCTTTTACATTCTCGATCGTGTCCGAAG 1167916
Query 139710 GCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||| ||||| | || | || || || || | || || || ||||| ||||||
Sbjct 1167915 CCTCGACCTCCAGTGTGATAGTTTTCCCAGTGAGAGTCTTGACAAATATCTGCATA 1167860
Score = 93.3 bits (102), Expect = 4e-14
Identities = 162/231 (70%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || |||||||| | ||| || || | || || ||||| |||||||| |||||
Sbjct 1165250 CCACCACGTAAACGGAGAACCAAATGCAATGTTGATTCTTTCTGAATGTTGTAATCAG-- 1165193
Query 139598 ATTGTGCTCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655
|| | | ||| |||||||||||||| || || |||||| | |||||||| ||||
Sbjct 1165192 ATAGAGTTCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAG 1165133
Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714
| || ||||| || || ||| |||| | ||| | | || | ||||| | | |||
Sbjct 1165132 GGATTCCTTCCTTATC-CTGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCA 1165074
Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|| || | || | ||||| || ||||| ||||| || || || ||||||
Sbjct 1165073 ACTTCCAATGTGATGGTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCATA 1165023
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| ||||| ||||| | ||| ||||| | || || || || ||||| ||||||||
Sbjct 1167631 CCACCTCGCAAACGGAGAACCAAGTGCAAGGTCGATTCCTTCTGAATATTATAATCTGAG 1167572
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || | |||||| || || || |||||| |||||| | |||||||| |||||
Sbjct 1167571 AGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGAGGG 1167512
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||||||||| ||| |||| | |||| | | || | ||||| | | || ||
Sbjct 1167511 ATTCCTTCTTTGTC-CTGAATTTTAGCTTTAACATTCTCGATCGTGTCTGATGCTTCGAC 1167453
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|| | || | ||| || || || | ||||| || || || ||||||
Sbjct 1167452 TTCCAGAGTGATCGTTTTACCAGTAAGTGTTTTGACAAAAATCTGCATA 1167404
>seq52431
Length=384
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| ||||| | ||||||||| | |||| || || || ||||||||||| || |||
Sbjct 304 CCTCCTCGAAGACGCAAAACCAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCGGAA 245
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || || || || || |||||||||||| | |||||||| |||||||| |||||
Sbjct 244 AGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGAGGA 185
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| || |||||||| |||||| || | | ||| | |||||| | | || ||
Sbjct 184 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAACT 125
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||| ||| | || || || || | || || ||||| || |||||
Sbjct 124 TCAAGGGTGATGGTTTTACCCGTGAGAGTCTTCACGAAGATCTGCAT 78
>seq5959
Length=1871824
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| ||||| | ||| | ||||| |||| |||||||| || || ||||| || |||
Sbjct 1420637 CCTCCTCGAAGACGTAGAACTAGATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAG 1420696
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || || ||||| || || || |||||| ||||||||||||||||||| |||||
Sbjct 1420697 AGAGTTCTTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGAGGG 1420756
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| ||||||||||| ||| || ||| | | || | || || | | ||||||
Sbjct 1420757 ATACCTTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTATCAGAAGCTTCCACC 1420816
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||| || | || || || || | ||||| || || ||||||||
Sbjct 1420817 TCAAGAGTGATGGTTTTTCCAGTGAGGGTTTTCACAAAGATTTGCAT 1420863
Score = 82.4 bits (90), Expect = 8e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
|| || || |||||||||||| | |||||||| |||||||| ||||| || || ||||||
Sbjct 1420481 TCCTCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGAGGAATTCCCTCTTTG 1420540
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| |||||| || | | ||| | |||||| | | || || |||| || |
Sbjct 1420541 TCCTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGAGTAATG 1420600
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| ||||| || | || || || || ||||||||
Sbjct 1420601 GTTTTGCCAGTAAGAGTCTTCACAAAGATTTGCAT 1420635
>seq68007
Length=840
Score = 100 bits (110), Expect = 3e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609
|| ||||||||||| | ||||| || ||||| ||||| |||||| | || || |
Sbjct 455 CGTAAAACTAAGTGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTCCTACCG 396
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
||||| |||||||| || || |||| | ||| || ||||| || || || ||||||||
Sbjct 395 TCTTCTAGCTGTTTCCCTGCGAAGATTAAACGCTGTTGATCAGGTGGGATTCCTTCTTTA 336
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||||| ||||| | ||| | || || | | || || |||| ||| |
Sbjct 335 TCTTGTATTTTGGCTTTTACGTTTTCTATGGTATCCGAAGCTTCAACTTCAAGGGTAATT 276
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| |||||||| | || || || || ||||||||
Sbjct 275 GTTTTGCCGGTGAGAGTCTTCACAAAAATTTGCAT 241
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| ||||| | |||| ||| | |||| || || || |||||||||||||| |||
Sbjct 239 CCTCCTCGAAGGCGCAGAACCAGATGAAGTGTTGATTCCTTTTGAATGTTATAGTCGGAA 180
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || || || || || ||||| |||||| | |||| |||||| ||||| || ||
Sbjct 179 AGAGTTCTGCCATCCTCCAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGGA 120
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| || |||||||| |||||| || | | ||| | |||||| | | || ||
Sbjct 119 ATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAACT 60
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||| ||| | || || || || | ||||||||||| || |||||
Sbjct 59 TCAAGGGTGATGGTTTTACCCGTAAGAGTTTTTACGAAGATCTGCAT 13
>seq2744
Length=396707
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/201 (69%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 52550 TTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCA 52609
|||||||||| | || || | | ||||||||||| ||||| | | || | || |
Sbjct 260824 TTCCGTGTGTAGGGAAGAAAGCCAAGTGGGCATTGAACTGGATTAATCATGAGAGTGCTA 260883
Query 52610 CTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTT 52669
| ||| | |||||| | |||| || || ||| || ||| | ||||| || ||||
Sbjct 260884 CATTTCCAGAACGTGTAATCGCATTCGCGGCAGTCGAGGGTATTTTTTTCAGCGGCAGTT 260943
Query 52670 TTGCGGCAATATTTTACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACG 52729
||||||| || |||| | || | || | ||||| |||||||| ||||||||||
Sbjct 260944 TTGCGGCTATCTTTTGGCTGAAGAAACGAGGAGTCATGCCAGGCCTCACTTTTAGCAACG 261003
Query 52730 AGTTGATATCGCGCGACGAAG 52750
| | || || || |||||||
Sbjct 261004 AACTCATCTCACGAGACGAAG 261024
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495632976191200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |