Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08]
69,511 sequences; 396,024,718 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq5686 109 8e-19
seq4102 107 3e-18
seq2744 89.7 7e-13
>seq5686
Length=2262380
Score = 109 bits (120), Expect = 8e-19
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737
||||||| | || |||||||||||||| || || |||| ||| ||||| || ||||||
Sbjct 1101220 CACTAAAGACCTTCTTTGTTTCCTTGTGCAGGTTGGATATGGCAATTCTAGCTGCTAAAG 1101279
Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797
| ||||||||||||||||| | | ||| || || |||| ||||||| | ||||
Sbjct 1101280 TTGCATAATCTGGATGTTGATTGATCATAGTCGCCGCAGTTTCAGCTGCCAAGTTATCCA 1101339
Query 80798 ATTCTACCGTTGTTACTCCA 80817
|||| | |||||| ||||||
Sbjct 1101340 ATTCGATCGTTGTCACTCCA 1101359
Score = 102 bits (112), Expect = 1e-16
Identities = 121/164 (74%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359
|||| |||||||| |||| || |||| ||| ||||| || ||||| || || |||
Sbjct 1099436 TATGACTCATAAGGACCTTTCTCAATAGCTATTTCGCAACTTGCTTCTAAAGCGCCATAA 1099495
Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419
|||| ||||| ||||| | | ||||| || | ||||| ||| |||||||||||
Sbjct 1099496 TAAAGAGTTTCAAAAATTTGGATGTTGAGTTCCTTAGCTTCGTCGCTTTCAAATGGATAC 1099555
Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 79463
| | | || ||||| |||||||||||||| |||| ||||||
Sbjct 1099556 CTCATTAAGATCAACGCATCTGCTAATCCTTGTACACTAATACC 1099599
>seq4102
Length=4342353
Score = 107 bits (118), Expect = 3e-18
Identities = 211/310 (68%), Gaps = 4/310 (1%)
Strand=Plus/Minus
Query 78967 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTC 79026
|||| ||||||| | || | |||| || | || ||||| | |||||| |||
Sbjct 713454 TGAACGGATCCAAAGTTCGCGAGAATCTCGTTTTGCATGTCTTCGTCCCATAAACCTCTG 713395
Query 79027 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 79086
| || || ||| || ||||||||||| || | ||| |||||||||||||| | |
Sbjct 713394 GCAGTCAAGTCTCGCAGTAGATGCGGATTGACGATGACAAACTCTCCAGACAATACGCGC 713335
Query 79087 CGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCA 79146
| ||| ||||| || || || ||||| | ||||| ||||| || ||||| || ||
Sbjct 713334 CTCACGTAGATATTGCTCGTGTACGGTTCAATAGATTCGTTATTCCCTAAAATCTGCGCT 713275
Query 79147 GTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATC--TGA 79204
|| || ||||||||||||||||| | || | |||||| | ||| || || ||
Sbjct 713274 GTCGAGGCCGTTGGCATAGGTGCTATTAAAAGTGAATTTCTCACTCCG--TGCTCCGCGA 713217
Query 79205 TTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCAT 79264
| || |||| | ||||||| ||| | ||| | || ||| ||||| | ||| |
Sbjct 713216 TCTTCGCTTTCAATTCATCCCAATTCCATAAATCCGTTGGTTTAACGTTCCACATATCGT 713157
Query 79265 ATTGTAGAAT 79274
|||| || ||
Sbjct 713156 ATTGGAGGAT 713147
>seq2744
Length=396707
Score = 89.7 bits (98), Expect = 7e-13
Identities = 76/94 (81%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516
||||||||| | |||||||| || || | |||||||||||||| | |||||| ||| |
Sbjct 260281 TACTTCTTCTATGGTCCAAAAAGAGGCTACAGCCTTTTTATACATCTCCCAGATATCAGG 260222
Query 50517 ATATTGGATTGGGAAAATAACAAATCTATTTGGA 50550
|||||| || || ||||| ||||| | |||||||
Sbjct 260221 ATATTGAATAGGAAAAATTACAAAACGATTTGGA 260188
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 717644705218040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |