Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5686 109 8e-19 seq4102 107 3e-18 seq2744 89.7 7e-13 >seq5686 Length=2262380 Score = 109 bits (120), Expect = 8e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 ||||||| | || |||||||||||||| || || |||| ||| ||||| || |||||| Sbjct 1101220 CACTAAAGACCTTCTTTGTTTCCTTGTGCAGGTTGGATATGGCAATTCTAGCTGCTAAAG 1101279 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 | ||||||||||||||||| | | ||| || || |||| ||||||| | |||| Sbjct 1101280 TTGCATAATCTGGATGTTGATTGATCATAGTCGCCGCAGTTTCAGCTGCCAAGTTATCCA 1101339 Query 80798 ATTCTACCGTTGTTACTCCA 80817 |||| | |||||| |||||| Sbjct 1101340 ATTCGATCGTTGTCACTCCA 1101359 Score = 102 bits (112), Expect = 1e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 |||| |||||||| |||| || |||| ||| ||||| || ||||| || || ||| Sbjct 1099436 TATGACTCATAAGGACCTTTCTCAATAGCTATTTCGCAACTTGCTTCTAAAGCGCCATAA 1099495 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 |||| ||||| ||||| | | ||||| || | ||||| ||| ||||||||||| Sbjct 1099496 TAAAGAGTTTCAAAAATTTGGATGTTGAGTTCCTTAGCTTCGTCGCTTTCAAATGGATAC 1099555 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 79463 | | | || ||||| |||||||||||||| |||| |||||| Sbjct 1099556 CTCATTAAGATCAACGCATCTGCTAATCCTTGTACACTAATACC 1099599 >seq4102 Length=4342353 Score = 107 bits (118), Expect = 3e-18 Identities = 211/310 (68%), Gaps = 4/310 (1%) Strand=Plus/Minus Query 78967 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTC 79026 |||| ||||||| | || | |||| || | || ||||| | |||||| ||| Sbjct 713454 TGAACGGATCCAAAGTTCGCGAGAATCTCGTTTTGCATGTCTTCGTCCCATAAACCTCTG 713395 Query 79027 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 79086 | || || ||| || ||||||||||| || | ||| |||||||||||||| | | Sbjct 713394 GCAGTCAAGTCTCGCAGTAGATGCGGATTGACGATGACAAACTCTCCAGACAATACGCGC 713335 Query 79087 CGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCA 79146 | ||| ||||| || || || ||||| | ||||| ||||| || ||||| || || Sbjct 713334 CTCACGTAGATATTGCTCGTGTACGGTTCAATAGATTCGTTATTCCCTAAAATCTGCGCT 713275 Query 79147 GTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATC--TGA 79204 || || ||||||||||||||||| | || | |||||| | ||| || || || Sbjct 713274 GTCGAGGCCGTTGGCATAGGTGCTATTAAAAGTGAATTTCTCACTCCG--TGCTCCGCGA 713217 Query 79205 TTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCAT 79264 | || |||| | ||||||| ||| | ||| | || ||| ||||| | ||| | Sbjct 713216 TCTTCGCTTTCAATTCATCCCAATTCCATAAATCCGTTGGTTTAACGTTCCACATATCGT 713157 Query 79265 ATTGTAGAAT 79274 |||| || || Sbjct 713156 ATTGGAGGAT 713147 >seq2744 Length=396707 Score = 89.7 bits (98), Expect = 7e-13 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 ||||||||| | |||||||| || || | |||||||||||||| | |||||| ||| | Sbjct 260281 TACTTCTTCTATGGTCCAAAAAGAGGCTACAGCCTTTTTATACATCTCCCAGATATCAGG 260222 Query 50517 ATATTGGATTGGGAAAATAACAAATCTATTTGGA 50550 |||||| || || ||||| ||||| | ||||||| Sbjct 260221 ATATTGAATAGGAAAAATTACAAAACGATTTGGA 260188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717644705218040