Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq33144 107 3e-18 seq2744 107 3e-18 seq5686 104 3e-17 seq1369 104 3e-17 seq4102 100 4e-16 seq50961 95.1 2e-14 >seq33144 Length=491 Score = 107 bits (118), Expect = 3e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 72427 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCA 72486 ||||||| || || |||| |||||||| || |||||| | ||||||||| || Sbjct 491 TTAAATAGTGTTGGTAAAGCATGCGTAAAATATCGTTCAGATAAATAATTGTACGTTTCT 432 Query 72487 ATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGA 72546 |||||| || || || || || || || | || || | |||||||||||| ||| Sbjct 431 ATAGCTTTGTCAATGTCGTTTTCGTGAATACCAATAGCTACTCTCATTAACATATGTTGA 372 Query 72547 GGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAA 72606 || || |||| |||||| ||| ||||| | || ||| | |||| | ||||||||| Sbjct 371 GGCCTCCCAACCATCTTGCCATTAATTTTTAGCAGATAGCTTATTTCGAGCGTTTTAAAA 312 Query 72607 CCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCC 72663 || ||| | | ||||||||| ||||| || ||||| |||| ||| | ||| Sbjct 311 TGAATATAATCAAAACCAAAGTCTCGATCGTATATTATAACAGAATCTAGTCTCTCC 255 >seq2744 Length=396707 Score = 107 bits (118), Expect = 3e-18 Identities = 80/94 (85%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATG 42621 ||||||||||| |||||||| || ||| | |||||||||||||| | |||||||||| | Sbjct 260281 TACTTCTTCTATGGTCCAAAAAGAGGCTACAGCCTTTTTATACATCTCCCAGATATCAGG 260222 Query 42622 ATATTGAATTGGGAAAATAACAAATCTATTTGGA 42655 ||||||||| || ||||| ||||| | ||||||| Sbjct 260221 ATATTGAATAGGAAAAATTACAAAACGATTTGGA 260188 >seq5686 Length=2262380 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 ||||||| | || |||||||||||||| || || |||| ||| ||||| || |||| | Sbjct 1101220 CACTAAAGACCTTCTTTGTTTCCTTGTGCAGGTTGGATATGGCAATTCTAGCTGCTAAAG 1101279 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 | ||||||||||||||||| | | ||| || || |||| ||||||| | |||| Sbjct 1101280 TTGCATAATCTGGATGTTGATTGATCATAGTCGCCGCAGTTTCAGCTGCCAAGTTATCCA 1101339 Query 72881 ATTCTACCGTTGTTACTCCA 72900 |||| | |||||| |||||| Sbjct 1101340 ATTCGATCGTTGTCACTCCA 1101359 Score = 95.1 bits (104), Expect = 2e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 71377 CCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCT 71436 ||| |||||| || || || |||| | |||| ||| ||||| || ||||| || Sbjct 1099430 CCTTCATATGACTCATAAGGACCTTTCTCAATAGCTATTTCGCAACTTGCTTCTAAAGCG 1099489 Query 71437 CCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAAT 71496 |||||||||| ||||| ||||| | | ||||| || | ||||| ||| |||||| Sbjct 1099490 CCATAATAAAGAGTTTCAAAAATTTGGATGTTGAGTTCCTTAGCTTCGTCGCTTTCAAAT 1099549 Query 71497 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACC 71546 ||||| | | | || ||||| |||||||||||||| || | |||||| Sbjct 1099550 GGATACCTCATTAAGATCAACGCATCTGCTAATCCTTGTACACTAATACC 1099599 >seq1369 Length=41173 Score = 104 bits (114), Expect = 3e-17 Identities = 173/249 (69%), Gaps = 1/249 (0%) Strand=Plus/Plus Query 72416 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 72475 |||| | || ||||||| || || |||| |||||||| || |||||| | || Sbjct 40777 TAGTACAAGCGTTAAATAGTGTTGGTAAAGCATGCGTAAAATATCGTTCAGATAAATAAT 40836 Query 72476 TGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTA 72535 ||||||| || |||||| || || || || || || || | || || | ||||| Sbjct 40837 TGTACGTTTCTATAGCTTTGTCAATGTCGTTTTCGTGAATACCAATAGCTACTCTCATTA 40896 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 ||||||| ||||| || |||| |||||| ||| ||||| | || ||| | |||| | Sbjct 40897 ACATATGTTGAGGCCTCCCAACCATCTTGCCATTAATTTTTAGCAGATAGCTTATTTCGA 40956 Query 72596 AAG-TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTG 72654 | |||||||| || ||| | | ||||||||| ||||| || ||||| |||| Sbjct 40957 GCGTTTTTAAAATGAATATAATCAAAACCAAAGTCTCGATCGTATATTATAACAGAATCT 41016 Query 72655 AGTTTATCC 72663 ||| | ||| Sbjct 41017 AGTCTCTCC 41025 >seq4102 Length=4342353 Score = 100 bits (110), Expect = 4e-16 Identities = 192/281 (68%), Gaps = 4/281 (1%) Strand=Plus/Minus Query 71050 TGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTC 71109 |||| ||||||| | || | |||| |||| || ||||| | |||||| ||| Sbjct 713454 TGAACGGATCCAAAGTTCGCGAGAATCTCGTTTTGCATGTCTTCGTCCCATAAACCTCTG 713395 Query 71110 TCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTA 71169 | || || ||| || ||||| ||||| || | ||| |||||||||||||| | Sbjct 713394 GCAGTCAAGTCTCGCAGTAGATGCGGATTGACGATGACAAACTCTCCAGACAATACGCGC 713335 Query 71170 CGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCA 71229 | ||| ||||| || || |||||||| | || || ||||| || ||||| || || Sbjct 713334 CTCACGTAGATATTGCTCGTGTACGGTTCAATAGATTCGTTATTCCCTAAAATCTGCGCT 713275 Query 71230 GTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATC--GGA 71287 || || || || ||||||||||| | || || |||||| | || ||| || || Sbjct 713274 GTCGAGGCCGTTGGCATAGGTGCTATTAAAAGTGAATTTCTCACTCC--GTGCTCCGCGA 713217 Query 71288 TTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGT 71328 | || |||| | ||||||||||| | ||||| |||| Sbjct 713216 TCTTCGCTTTCAATTCATCCCAATTCCATAAATCCGTTGGT 713176 >seq50961 Length=745 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 72427 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCA 72486 ||||||| || || ||| ||| |||| || |||||| | ||||||||| || Sbjct 13 TTAAATAGTGTTGGTAGAGCATGCTTAAAATATCGTTCAGATAAATAATTGTACGTTTCT 72 Query 72487 ATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGA 72546 |||||| || | || || || || | || || | |||||||||||| ||| Sbjct 73 ATAGCTTTGTCGTTTTCG------TGAATACCAATAGCTACTCTCATTAACATATGTTGA 126 Query 72547 GGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAA 72606 || || |||| |||||| ||| ||||| | || ||| | |||| | ||||||||| Sbjct 127 GGCCTCCCAACCATCTTGCCATTAATTTTTAGCAGATAGCTTATTTCGAGCGTTTTAAAA 186 Query 72607 CCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCC 72663 || ||| || || ||||||||| ||||| || ||||| |||| ||| | ||| Sbjct 187 TGAATATAATTATAACCAAAGTCTCGATCGTATATTATAACAGAATCTAGTCTCTCC 243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670556055538360