Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq68007 150 1e-31 seq52431 125 5e-24 seq5959 109 4e-19 seq5117 105 5e-18 seq1104 96.9 3e-15 >seq68007 Length=840 Score = 150 bits (166), Expect = 1e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 || ||||||||| || || || || || ||||| |||||||||||| ||| | || | Sbjct 456 TCGTAAAACTAAGTGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTCCTACC 397 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 |||||||| ||||| || ||| | || ||||| ||||| || ||| ||||||||||| Sbjct 396 GTCTTCTAGCTGTTTCCCTGCGAAGATTAAACGCTGTTGATCAGGTGGGATTCCTTCTTT 337 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || |||||| ||||| ||||||||||||| | ||| || || | |||||| Sbjct 336 ATCTTGTATTTTGGCTTTTACGTTTTCTATGGTATCCGAAGCTTCAACTTCAAGGGTAAT 277 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || ||||| || |||||||||||||| Sbjct 276 TGTTTTGCCGGTGAGAGTCTTCACAAAAATTTGCAT 241 Score = 140 bits (154), Expect = 2e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| || || || ||||| ||||| || ||| ||| |||| | || || Sbjct 222 AACCAGATGAAGTGTTGATTCCTTTTGAATGTTATAGTCGGAAAGAGTTCTGCCATCCTC 163 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | |||||||||||| | |||||||||||||| || |||||||| |||||||| Sbjct 162 CAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGGAATTCCCTCTTTGTCCTG 103 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||| ||| ||| ||||||| || || | ||| || || | ||| |||||||| Sbjct 102 GATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGGGTGATGGTTTT 43 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || ||||||||||| || || ||||| Sbjct 42 ACCCGTAAGAGTTTTTACGAAGATCTGCAT 13 >seq52431 Length=384 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| | |||||| ||||| || ||||| |||||||| ||| ||| |||| | || Sbjct 289 AAAACCAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCGGAAAGAGTTCTACCATCC 230 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | |||||| ||||| | |||| ||| || || || |||||||| |||||||| Sbjct 229 TCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCT 170 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 |||||| ||| ||| ||||||| || || | ||| || || | ||| |||||| Sbjct 169 TGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGGGTGATGGTT 110 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || ||||| || || || || ||||| Sbjct 109 TTACCCGTGAGAGTCTTCACGAAGATCTGCAT 78 >seq5959 Length=1871824 Score = 109 bits (120), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 || ||||| |||||| || || || || || |||||||| ||| ||| |||| | || Sbjct 1420651 TAGAACTAGATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTTCCATC 1420710 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| | ||| || ||||| | |||| |||||| || || || || ||||||||||| Sbjct 1420711 TTCCAGTTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGAGGGATACCTTCTTTGTC 1420770 Query 15271 ACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329 || || ||| || ||| | ||||| ||||| | ||| || || | || |||| Sbjct 1420771 TTGGATCTTAGCT-TTGACATTCTCTATAGTATCAGAAGCTTCCACCTCAAGAGTGATGG 1420829 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| || || || ||||| ||||| |||||||| Sbjct 1420830 TTTTTCCAGTGAGGGTTTTCACAAAGATTTGCAT 1420863 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 15179 TGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAA 15238 || |||||||| ||| ||| |||| | || || | |||||| ||||| | |||| | Sbjct 1420451 TGAATGTTGTAGTCGGAAAGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGA 1420510 Query 15239 CGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATG 15298 || || || || |||||||| |||||||| |||||| ||| ||| ||||||| Sbjct 1420511 CGCTGCTGATCTGGAGGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATT 1420570 Query 15299 GTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATT 15358 || || | ||| || || | ||||||||||| || || ||||| || ||||| ||| Sbjct 1420571 GTGTCTGAAGCTTCAACTTCAAGAGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAGATT 1420630 Query 15359 TGCAT 15363 ||||| Sbjct 1420631 TGCAT 1420635 >seq5117 Length=2329582 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208 || ||||| ||||| || ||||| || ||||| ||||| ||||| || | | || Sbjct 1167847 CTCAAAACCAAATGCAGAGTGGATTCCTTTTGAATGTTATAATCAGACAGTGTGCGACCG 1167788 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| | |||||| ||||| | ||||| | ||||| || ||||||||||| ||| Sbjct 1167787 TCTTCGAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATTCCTTCCTTG 1167728 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || ||||||| || ||| | || || || || || || || || || ||| Sbjct 1167727 TCCTGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAACTTCCAATGTGATG 1167668 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || |||| |||||| |||||||| |||||| Sbjct 1167667 GTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCATA 1167632 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || | |||||| | ||| || |||||||| || || || || || ||||| || Sbjct 1164794 CCGCCGCGCAATCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGAC 1164735 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | ||||||| | || || |||||| | ||||||||||| ||||| ||| Sbjct 1164734 AAGGTGCGTCCGTCTTCAAGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCAGGTGGG 1164675 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| ||||| ||| ||||| |||||| | || || || ||| | || || Sbjct 1164674 ATGCCTTCCTTGTCCTGAATCTTTGC-CTTTACGTTCTCAATAGTGTCGGAAGCCTCGAC 1164616 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| || || |||| || ||||||||||| ||||| Sbjct 1164615 CTCGAGGGTTATGGTCTTTCCGGTCAACGTCTTTACAAAAATCTGCAT 1164568 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| ||||| ||||| | ||||| |||||||| || |||||||| Sbjct 1167403 CCACCGCGAAGTCTCAAAACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAG-- 1167346 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| || ||||||| | ||||| || || | ||||| | ||||| ||| | Sbjct 1167345 ACAATGTGCGTCCGTCTTCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGATCGGGAG 1167286 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||||||||| |||||| ||| || | || || || || | || | Sbjct 1167285 GAATACCTTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGA 1167226 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || || || ||||| || ||||| | |||||| || ||||| |||||| Sbjct 1167225 CCTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCATA 1167176 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| | || || ||||| || ||||||||||| |||| ||| | ||||| Sbjct 1165233 AACCAAATGCAATGTTGATTCTTTCTGAATGTTGTAATCAGATAGAGTTCGGCCATCTTC 1165174 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||||| || ||| | ||||| | || || || || |||||||| || || Sbjct 1165173 GAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCCTTATCCTG 1165114 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||||| || ||| | || || || || || || || || || ||||| || Sbjct 1165113 AATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAACTTCCAATGTGATGGTCTT 1165054 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| |||||| |||||||| |||||| Sbjct 1165053 TCCCGTCAAAGTTTTGACAAAAATCTGCATA 1165023 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| ||| | | ||| || || | ||| || || || || || || ||||| Sbjct 1167631 CCACCTCGCAAACGGAGAACCAAGTGCAAGGTCGATTCCTTCTGAATATTATAATCTGAG 1167572 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | ||||||| | ||| || ||||| | ||||| | || || || || Sbjct 1167571 AGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGAGGG 1167512 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||||||||| |||||| ||| || ||| | || || || || ||| || Sbjct 1167511 ATTCCTTCTTTGTCCTGAATTTTAGCT-TTAACATTCTCGATCGTGTCTGATGCTTCGAC 1167453 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || || |||||||| || || ||||| |||||||| |||||| Sbjct 1167452 TTCCAGAGTGATCGTTTTACCAGTAAGTGTTTTGACAAAAATCTGCATA 1167404 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| ||| | | ||| || || | ||| || || || || || || ||||| Sbjct 1165022 CCACCTCGCAAACGGAGAACCAAGTGCAAGGTCGATTCCTTCTGAATATTATAATCTGAG 1164963 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | ||||||| | ||| || ||||| | ||||| | |||||| || || Sbjct 1164962 AGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGATCCGGAGGG 1164903 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||||||||| |||||| ||| || || | || || || || | |||||| Sbjct 1164902 ATGCCTTCTTTGTCCTGAATTTTCGCT-TTGACGTTCTCGATCGTGTCCGAAGCTTCTAC 1164844 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || || || |||| ||||| || || || ||||| Sbjct 1164843 CTCCAAAGTAATTGTCTTTCCCGTCAAGGTTTTAACGAAGATCTGCAT 1164796 >seq1104 Length=1074228 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 15174 CTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15233 |||| || |||||||||||| ||| | | | | || || | |||||||||||| | | Sbjct 391034 CTTTCTGAATGTTGTAATCGGAAAGAGTGCGCCCATCCTCCAGCTGTTTGCCAGCGAAGA 390975 Query 15234 TCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTT 15293 | | || ||||| || ||| ||||| || ||||| || ||| ||| ||| | | Sbjct 390974 TGAGCCGCTGTTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCT 390915 Query 15294 CTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAA 15353 | ||||| ||| ||||| || | ||||||||| ||||| || || ||||| |||| Sbjct 390914 CGATGGTGTCGGAGGCCTCTACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTCACAA 390855 Query 15354 AAATTTGCATA 15364 | || |||||| Sbjct 390854 AGATCTGCATA 390844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361872374344851