Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08]
69,511 sequences; 396,024,718 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq5117 104 2e-17
>seq5117
Length=2329582
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 18827 CTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCG 18886
|| || |||| ||||| || || || ||||||||||||||||| | || ||| ||
Sbjct 1167391 CTCAAAACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGACAATGTGCGTCCG 1167332
Query 18887 TCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTG 18946
|| || |||||||| || ||| | || | |||||| ||||| || | || ||||||
Sbjct 1167331 TCTTCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTG 1167272
Query 18947 TCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATG 19006
|| ||||||| || || | ||| || || || ||| || | || |||
Sbjct 1167271 TCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGATG 1167212
Query 19007 GTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || ||||||||||||||||| ||||| |||||
Sbjct 1167211 GTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 1167177
Score = 95.1 bits (104), Expect = 1e-14
Identities = 144/204 (71%), Gaps = 1/204 (0%)
Strand=Plus/Minus
Query 18839 TGCAACGTAGACTCCTT-TTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897
|| |||||||| ||||| ||||||||||||||| | || ||| |||| || || ||
Sbjct 1167151 TGTAACGTAGATTCCTTCTTGAATATTGTAATCAGACAATGTGCGTCCGTCTTCGAGTTG 1167092
Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957
||| || ||| | || | |||||||||||| || | ||||||||||| ||||||
Sbjct 1167091 TTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGAATACCCTCTTTGTCTTGAATTTT 1167032
Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017
| || || | ||| || || || ||| || | || || ||||| || ||
Sbjct 1167031 CGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGATAGTTTTGCCAGT 1166972
Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041
| ||||||||| ||||| |||||
Sbjct 1166971 GAGAGTTTTGACGAAAATCTGCAT 1166948
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
|| |||||||| | | |||| |||||| || || ||||| |||||||| ||||| |
Sbjct 1167631 CCACCTCGCAAACGGAGAACCAAGTGCAAGGTCGATTCCTTCTGAATATTATAATCTGAG 1167572
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934
| || | |||| || || || || || ||| | || | |||||||||||| ||
Sbjct 1167571 AGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGAGGG 1167512
Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG-T 18993
| || |||||||| |||||| ||| || | ||| || || | ||| ||
Sbjct 1167511 ATTCCTTCTTTGTCCTGAATTTTAGCTTTAACATTCTCGATCGTGTC-TGATGCTTCGAC 1167453
Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
||| | || || |||||||| || | |||||||||||||| |||||
Sbjct 1167452 TTCCAGAGTGATCGTTTTACCAGTAAGTGTTTTGACAAAAATCTGCAT 1167405
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
|| || || | ||| || |||| |||| || || ||||||||||| || ||||| | |
Sbjct 1167859 CCGCCACGAAGCCTCAAAACCAAATGCAGAGTGGATTCCTTTTGAATGTTATAATCAGAC 1167800
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934
| ||| |||| || || ||||| || ||| | || | |||||| ||||| ||
Sbjct 1167799 AGTGTGCGACCGTCTTCGAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCTGGAGGA 1167740
Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994
| || || ||||| |||||| ||| || | ||| || || | ||| |
Sbjct 1167739 ATTCCTTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAACT 1167680
Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| | || ||||| || || || ||||||||||||||||| |||||
Sbjct 1167679 TCCAATGTGATGGTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1167633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414221588304334
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |