Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq5117 96.9 2e-15 seq68007 82.4 5e-11 >seq5117 Length=2329582 Score = 96.9 bits (106), Expect = 2e-15 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | || || || || || |||||||| |||||||| || || ||| || Sbjct 1164776 ACCAAGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGACAAGGTGCGTCCGTCTTCA 1164717 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | ||||||||| || || |||||||||||||| | || |||||||| || || | Sbjct 1164716 AGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCAGGTGGGATGCCTTCCTTGTCCTGA 1164657 Query 33281 ATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 ||| ||| ||||| | | ||| |||||| | | || || || ||||| || Sbjct 1164656 ATCTTTGCC---TTTACGTTCTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTTATGGTC 1164600 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||||| || | || ||||| ||||| |||||| Sbjct 1164599 TTTCCGGTCAACGTCTTTACAAAAATCTGCATG 1164567 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||| || || | ||||| ||||| ||||| || || || ||||| ||||| || Sbjct 1165023 ACCACCTCGCAAACGGAGAACCAAGTGCAAGGTCGATTCCTTCTGAATATTATAATCTGA 1164964 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | | ||| || | |||||||||| ||| || || | ||| || |||| || Sbjct 1164963 GAGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGATCCGGAGG 1164904 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 ||||||||||| || ||| | ||| || | | |||||||| | || || Sbjct 1164903 GATGCCTTCTTTGTCCTGAATTTTCGCTTTGACGTTCTCGATCGTGTCCGAAGCTTCTAC 1164844 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| ||| || || |||||||| | ||||| ||||| || ||||| Sbjct 1164843 CTCCAAAGTAATTGTCTTTCCCGTCAAGGTTTTAACGAAGATCTGCAT 1164796 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 ||| |||||||||||||| || |||||||| ||||||||||||||||| || || ||| Sbjct 1167389 CAAAACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGACAATGTGCGTCCGTC 1167330 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 || | || ||||| ||| || || | || || || | || || |||||||| || Sbjct 1167329 TTCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTGTC 1167270 Query 33277 GCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 || ||||| || || | | || ||||| | | || |||| || || Sbjct 1167269 TTGAATTTTCGCC---TTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGAT 1167213 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || | |||||| |||||||| ||||| Sbjct 1167212 GGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 1167177 >seq68007 Length=840 Score = 82.4 bits (90), Expect = 5e-11 Identities = 153/223 (69%), Gaps = 14/223 (6%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| |||| ||| | ||| || || ||||| || || || || || | ||||| Sbjct 227 CGCAGAACCAGATGAAGTGTTGATTCCTTTTGAATGTTATAGTCGGAAA----GAGTTCT 172 Query 33215 ----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270 || |||| ||| || ||| ||| || |||||||| || || | ||| || || || Sbjct 171 GCCATCCTCCAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGGAATTCCCTC 112 Query 33271 TTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAG 33327 ||| || | | | |||| | || ||| || ||||| | || ||| || || Sbjct 111 TTTGTCCTGGATTTTGGCCT---TCACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAG 55 Query 33328 AGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || ||||| |||||||||||||||||||| || |||||| Sbjct 54 GGTGATGGTTTTACCCGTAAGAGTTTTTACGAAGATCTGCATG 12 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318507542674878