Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08]
69,511 sequences; 396,024,718 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq5117 96.9 2e-15
seq68007 82.4 5e-11
>seq5117
Length=2329582
Score = 96.9 bits (106), Expect = 2e-15
Identities = 150/213 (70%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220
||||| || | || || || || || |||||||| |||||||| || || ||| ||
Sbjct 1164776 ACCAAGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGACAAGGTGCGTCCGTCTTCA 1164717
Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280
| ||||||||| || || |||||||||||||| | || |||||||| || || |
Sbjct 1164716 AGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCAGGTGGGATGCCTTCCTTGTCCTGA 1164657
Query 33281 ATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337
||| ||| ||||| | | ||| |||||| | | || || || ||||| ||
Sbjct 1164656 ATCTTTGCC---TTTACGTTCTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTTATGGTC 1164600
Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
||||| || | || ||||| ||||| ||||||
Sbjct 1164599 TTTCCGGTCAACGTCTTTACAAAAATCTGCATG 1164567
Score = 96.9 bits (106), Expect = 2e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201
||| |||| || || | ||||| ||||| ||||| || || || ||||| ||||| ||
Sbjct 1165023 ACCACCTCGCAAACGGAGAACCAAGTGCAAGGTCGATTCCTTCTGAATATTATAATCTGA 1164964
Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261
| | | | ||| || | |||||||||| ||| || || | ||| || |||| ||
Sbjct 1164963 GAGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGATCCGGAGG 1164904
Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321
||||||||||| || ||| | ||| || | | |||||||| | || ||
Sbjct 1164903 GATGCCTTCTTTGTCCTGAATTTTCGCTTTGACGTTCTCGATCGTGTCCGAAGCTTCTAC 1164844
Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|||| ||| || || |||||||| | ||||| ||||| || |||||
Sbjct 1164843 CTCCAAAGTAATTGTCTTTCCCGTCAAGGTTTTAACGAAGATCTGCAT 1164796
Score = 93.3 bits (102), Expect = 3e-14
Identities = 151/216 (70%), Gaps = 6/216 (3%)
Strand=Plus/Minus
Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216
||| |||||||||||||| || |||||||| ||||||||||||||||| || || |||
Sbjct 1167389 CAAAACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGACAATGTGCGTCCGTC 1167330
Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276
|| | || ||||| ||| || || | || || || | || || |||||||| ||
Sbjct 1167329 TTCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTGTC 1167270
Query 33277 GCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333
|| ||||| || || | | || ||||| | | || |||| || ||
Sbjct 1167269 TTGAATTTTCGCC---TTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGAT 1167213
Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| ||||| || | |||||| |||||||| |||||
Sbjct 1167212 GGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 1167177
>seq68007
Length=840
Score = 82.4 bits (90), Expect = 5e-11
Identities = 153/223 (69%), Gaps = 14/223 (6%)
Strand=Plus/Minus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
|||| |||| ||| | ||| || || ||||| || || || || || | |||||
Sbjct 227 CGCAGAACCAGATGAAGTGTTGATTCCTTTTGAATGTTATAGTCGGAAA----GAGTTCT 172
Query 33215 ----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270
|| |||| ||| || ||| ||| || |||||||| || || | ||| || || ||
Sbjct 171 GCCATCCTCCAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGGAATTCCCTC 112
Query 33271 TTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAG 33327
||| || | | | |||| | || ||| || ||||| | || ||| || ||
Sbjct 111 TTTGTCCTGGATTTTGGCCT---TCACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAG 55
Query 33328 AGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
|| || ||||| |||||||||||||||||||| || ||||||
Sbjct 54 GGTGATGGTTTTACCCGTAAGAGTTTTTACGAAGATCTGCATG 12
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318507542674878
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |