Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5117 192 1e-43 seq5959 176 1e-38 seq68007 172 1e-37 seq52431 158 3e-33 seq2744 91.5 3e-13 seq514 84.2 5e-11 >seq5117 Length=2329582 Score = 192 bits (212), Expect = 1e-43 Identities = 180/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| ||||| || | |||||| || || | ||||||||||||||| ||||| ||||| | Sbjct 1168089 TTCCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGGATATTGTAGTCGG 1168030 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 | | ||||| ||||| || ||||| || ||||| ||||| || || |||||||| |||| Sbjct 1168029 ACAAAGTTCGTCCGTCCTCGAGTTGCTTGCCAGCGAAAATCAGTCTTTGTTGATCGGGAG 1167970 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510 | || || ||||| || ||||| |||||||||||||| || | || || || || | Sbjct 1167969 GAATGCCCTCTTTGTCTTGAATTTTTGCTTTTACATTCTCGATCGTGTCCGAAGCCTCGA 1167910 Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| ||||| ||||| || ||||| || || || |||||||||||||| Sbjct 1167909 CCTCCAGTGTGATAGTTTTCCCAGTGAGAGTCTTGACAAATATCTGCAT 1167861 Score = 181 bits (200), Expect = 2e-40 Identities = 162/203 (80%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || ||||| |||||||||||||| || || ||||| | |||||||| ||||| Sbjct 1167607 TGCAAGGTCGATTCCTTCTGAATATTATAATCTGAGAGAGTACGGCCGTCTTCAAGTTGC 1167548 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 ||||||||||| || | |||||| ||||| ||||| ||||||||||| |||||||| || Sbjct 1167547 TTTCCAGCAAAGATCAACCTCTGCTGATCCGGAGGGATTCCTTCTTTGTCCTGAATTTTA 1167488 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| ||||| || | || || | ||| || || || || || || ||||||||| Sbjct 1167487 GCTTTAACATTCTCGATCGTGTCTGATGCTTCGACTTCCAGAGTGATCGTTTTACCAGTA 1167428 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 |||||||| ||||| |||||||| Sbjct 1167427 AGTGTTTTGACAAAAATCTGCAT 1167405 Score = 161 bits (178), Expect = 2e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || ||||| |||||||||||||| || || ||||| | |||||||| ||||| Sbjct 1164998 TGCAAGGTCGATTCCTTCTGAATATTATAATCTGAGAGAGTACGGCCGTCTTCAAGTTGC 1164939 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 ||||||||||| || | || |||||||| ||||| || |||||||| |||||||| || Sbjct 1164938 TTTCCAGCAAAGATCAATCTTTGTTGATCCGGAGGGATGCCTTCTTTGTCCTGAATTTTC 1164879 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| || || || | || || || ||||||||| | ||||| ||||| || || Sbjct 1164878 GCTTTGACGTTCTCGATCGTGTCCGAAGCTTCTACCTCCAAAGTAATTGTCTTTCCCGTC 1164819 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 | ||||| || || ||||||||| Sbjct 1164818 AAGGTTTTAACGAAGATCTGCATT 1164795 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| ||||| |||||||||||||| || || ||||||||||||| || ||| Sbjct 1165235 AGAACCAAATGCAATGTTGATTCTTTCTGAATGTTGTAATCAGATAGAGTTCGGCCATCT 1165176 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || |||||||| || || || | |||||| ||||| ||||| |||||||| |||||| Sbjct 1165175 TCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCCTTATCC 1165116 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || ||||| ||||| || | || || | || || || | ||| || ||| Sbjct 1165115 TGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAACTTCCAATGTGATGGTC 1165056 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || | ||||| ||||| |||||||| Sbjct 1165055 TTTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1165024 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| | || | ||| | || ||||| || ||||| ||||| ||||| || || | | Sbjct 1167850 AGCCTCAAAACCAAATGCAGAGTGGATTCCTTTTGAATGTTATAATCAGACAGTGTGCGA 1167791 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 |||||||| ||||||||||||||||| || | ||||||||||| ||||| |||||||| Sbjct 1167790 CCGTCTTCGAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATTCCTTCC 1167731 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || |||||||| || ||||| ||||| || | || || | || || || | ||| Sbjct 1167730 TTGTCCTGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAACTTCCAATGTG 1167671 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || | ||||| ||||| |||||||| Sbjct 1167670 ATGGTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1167633 Score = 145 bits (160), Expect = 2e-29 Identities = 159/210 (76%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCT-GAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 |||| |||||| |||||||| |||| ||||||| || ||||| | || | |||||||| Sbjct 1167157 ACTAAATGTAACGTAGATTCCTTCTTGAATATTGTAATCAGACAATGTGCGTCCGTCTTC 1167098 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 ||||||||||| ||||| || | ||||| ||||| ||||| || || ||||| || || Sbjct 1167097 GAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGAATACCCTCTTTGTCTTG 1167038 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||| || || || || || || | || || || || ||||| | ||| ||||| || Sbjct 1167037 AATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGATAGTTTT 1166978 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||| || || |||||||| Sbjct 1166977 GCCAGTGAGAGTTTTGACGAAAATCTGCAT 1166948 Score = 138 bits (152), Expect = 3e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415 ||| ||||| |||||||| |||||||| || ||||| | || | |||||||| || || Sbjct 1167380 ATGCAATGTGGATTCTTTTTGAATATTGTAATCAGACAATGTGCGTCCGTCTTCGAGCTG 1167321 Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 |||||| ||||| || | ||||||||||| ||||| || |||||||| || ||||| || Sbjct 1167320 TTTTCCGGCAAAGATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTGTCTTGAATTTT 1167261 Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || || || || || | || || || || ||||| | ||| || ||||| || || Sbjct 1167260 CGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGATGGTCTTTCCTGT 1167201 Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559 | ||||| || || |||||||| Sbjct 1167200 TAAAGTTTTGACGAAAATCTGCAT 1167177 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| ||||| |||||||| | || | |||||||| || || |||||| Sbjct 1164764 GTTGATTCCTTCTGGATATTGTAGTCAGACAAGGTGCGTCCGTCTTCAAGCTGCTTTCCA 1164705 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | || || ||||| || || ||||| || |||||||||||||| ||| Sbjct 1164704 GCGAAGATCAAACGTTGCTGGTCAGGTGGGATGCCTTCCTTGTCCTGAATCTTTGCCTTT 1164645 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || ||| || || ||||| || || || ||||| || || | || Sbjct 1164644 ACGTTCTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTTATGGTCTTTCCGGTCAACGTC 1164585 Query 104543 TTTACAAATATCTGCAT 104559 |||||||| |||||||| Sbjct 1164584 TTTACAAAAATCTGCAT 1164568 Score = 102 bits (112), Expect = 2e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415 ||| ||||| |||||||||||||| ||||| ||||||| || | ||| ||||| ||||| Sbjct 1166923 ATGCAATGTGGATTCTTTCTGAATGTTATAATCAGATAATGTGCGACCATCTTCAAGTTG 1166864 Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 |||||| ||||| || | ||||| ||||| ||||| || || ||| Sbjct 1166863 TTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGAATACCCTCT 1166818 >seq5959 Length=1871824 Score = 176 bits (194), Expect = 1e-38 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| || | || |||||||| | |||||| || ||||| || || ||||| Sbjct 1420634 ATTCCTCCTCGAAGACGTAGAACTAGATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCG 1420693 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || ||||| ||||| ||||||||||| || || | || ||||| ||| Sbjct 1420694 GAGAGAGTTCTTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGA 1420753 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || || ||||| ||||| ||||| |||| ||||| || ||| Sbjct 1420754 GGGATACCTTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTATCAGAAGCTTCC 1420813 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || || || ||||| || ||||| ||||| || ||||| Sbjct 1420814 ACCTCAAGAGTGATGGTTTTTCCAGTGAGGGTTTTCACAAAGATTTGCAT 1420863 Score = 158 bits (174), Expect = 3e-33 Identities = 147/187 (79%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 104374 CTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAG 104433 |||||| || ||||| || ||||||||||| || || |||||||| ||||||||||| || Sbjct 1420450 CTGAATGTTGTAGTCGGAAAGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAG 1420509 Query 104434 CCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTAC 104493 | ||| ||||| ||||| ||||| ||||| ||||| || || || || |||||||||| Sbjct 1420510 ACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTAT 1420569 Query 104494 GGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATAT 104553 || || || ||| || || || ||||| || || |||||||| || || ||||| || Sbjct 1420570 TGTGTCTGAAGCTTCAACTTCAAGAGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAGAT 1420629 Query 104554 CTGCATT 104560 |||||| Sbjct 1420630 TTGCATT 1420636 >seq68007 Length=840 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| || | || || ||||| | ||| ||||| || ||||| |||||||| Sbjct 242 ATTCCTCCTCGAAGGCGCAGAACCAGATGAAGTGTTGATTCCTTTTGAATGTTATAGTCG 183 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || || || |||||||| ||||||||||| | | |||||||| || Sbjct 182 GAAAGAGTTCTGCCATCCTCCAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGG 123 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| ||||| ||||| || || || || |||||||||| || || || ||| Sbjct 122 GGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCA 63 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || ||||| ||||| |||||||| || |||||||| Sbjct 62 ACTTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTTACGAAGATCTGCAT 13 Score = 167 bits (184), Expect = 5e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| || | ||||||||| || || || || || || || ||||| |||||||||||| Sbjct 449 ACTAAGTGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTCCTACCGTCTTCT 390 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || ||||| || || || |||| | |||||||||||| || |||||||||||||| || Sbjct 389 AGCTGTTTCCCTGCGAAGATTAAACGCTGTTGATCAGGTGGGATTCCTTCTTTATCTTGT 330 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || || |||||||| ||||||| |||||| || ||| || || || ||||| || || Sbjct 329 ATTTTGGCTTTTACGTTTTCTATGGTATCCGAAGCTTCAACTTCAAGGGTAATTGTTTTG 270 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || ||||| || |||||| Sbjct 269 CCGGTGAGAGTCTTCACAAAAATTTGCATT 240 >seq52431 Length=384 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| || | | || ||||| | ||| ||||| || ||||| || ||||| Sbjct 307 ATTCCTCCTCGAAGACGCAAAACCAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCG 248 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||||||| || || |||||||| ||||||||||| || | ||| ||||| ||| Sbjct 247 GAAAGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGA 188 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| ||||| || || || || || || |||||||||| || || || ||| Sbjct 187 GGAATTCCCTCTTTGTCTTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCA 128 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || ||||| || || || || || || |||||||| Sbjct 127 ACTTCAAGGGTGATGGTTTTACCCGTGAGAGTCTTCACGAAGATCTGCAT 78 >seq2744 Length=396707 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 268841 TTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTA 268900 ||||| ||| || | | || || || || | | ||||||||||| || || ||||| Sbjct 260485 TTTATCTCTCATGTCTTGGCATTCTTCGCCGCTTCCGATGGTATCGTCAATGAGAATCTG 260544 Query 268901 GTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAG 268960 | |||| |||| |||| || || | || | ||||| | ||||| ||||| ||||| Sbjct 260545 ATTGAGAGGTTCAGTCAGGAAGTGAAAATCGCCGAAGCACGTTGTTTCTACGGCTTCCAA 260604 Query 268961 ATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGAT 269020 || || ||||| ||||| ||||| || |||||| | | | || || ||||| ||| Sbjct 260605 ATTGCCATAGAGAATATCCATTCTGAAATGTACTCTTTGCTCATTGAAACTTACATATCC 260664 Query 269021 GATAACAACGAAAAGAAA 269038 ||| || |||||| || Sbjct 260665 GATCCGAAAGAAAAGTAA 260682 >seq514 Length=2723796 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 |||||||| |||||||| || || || |||||||| | ||||| | || ||||| Sbjct 26980 CCTTCTTTGTCCTGAATTTTCGCCTTCACATTTTCGATTGTATCAGACGCCTCAACCTCA 27039 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| || ||||| ||||||||||| |||||||| Sbjct 27040 AGGGTGATGGTCTTTCCCGTAAGAGTTTTTACAAAGATCTGCAT 27083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150372953430788