Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08]
69,511 sequences; 396,024,718 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq5117 96.9 3e-15
seq1104 84.2 2e-11
>seq5117
Length=2329582
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
|| |||||||| || | || || ||||| || ||||| || || ||||| |||| |
Sbjct 1164794 CCGCCGCGCAATCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGAC 1164735
Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619
|| || |||| || |||||||| || || | || ||||| ||||| || ||
Sbjct 1164734 AAGGTGCGTCCGTCTTCAAGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCAGGTGGG 1164675
Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679
| | |||||||||| ||| || ||| | | | || || |||| || ||| |
Sbjct 1164674 ATGCCTTCCTTGTCCTGAATCTTTGCCTTTACGTTCTCAATAGTGTCGGAAGCCTCGACC 1164615
Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730
|||| |||||||| || ||||| | || || |||||||||||||| |||
Sbjct 1164614 TCGAGGGTTATGGTCTTTCCGGTCAACGTCTTTACAAAAATCTGCATGGTG 1164564
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| ||||| | || || || ||||| | |||| || |||||||| ||||||||||
Sbjct 1167404 ACCACCGCGAAGTCTCAAAACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGA 1167345
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
|||| || |||| || ||||| || ||| | | || || | ||| ||||| ||
Sbjct 1167344 CAATGTGCGTCCGTCTTCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGATCGGGAGG 1167285
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| || ||| ||||| ||||||| ||| | | | || || || | || |||
Sbjct 1167284 AATACCTTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGAC 1167225
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| | ||| ||||| || || || | |||||| || |||||||||||
Sbjct 1167224 CTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 1167177
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/229 (69%), Gaps = 1/229 (0%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTT-TTGAATGTTGTAATCAG 48557
||| ||||| | || || |||||||| | || ||||| |||||| ||||||||||
Sbjct 1167176 ACCACCGCGAAGTCTCAAAACTAAATGTAACGTAGATTCCTTCTTGAATATTGTAATCAG 1167117
Query 48558 CCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617
|||| || |||| || || || || ||| | | || || | ||||||||| |
Sbjct 1167116 ACAATGTGCGTCCGTCTTCGAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAG 1167057
Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677
| | || || ||||| ||||||| ||| | | | || || || | || |||
Sbjct 1167056 GAATACCCTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGA 1166997
Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| | ||| || ||||| || ||||||||||| || |||||||||||
Sbjct 1166996 CCTCCAATGTGATAGTTTTGCCAGTGAGAGTTTTGACGAAAATCTGCAT 1166948
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || || | ||| || || ||||| || ||| |||||||||||||| |||||||
Sbjct 1167860 ACCGCCACGAAGCCTCAAAACCAAATGCAGAGTGGATTCCTTTTGAATGTTATAATCAGA 1167801
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
|| | || |||| || || || || || | | || || | ||| ||||| ||
Sbjct 1167800 CAGTGTGCGACCGTCTTCGAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCTGGAGG 1167741
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | |||||||||| |||||| |||| | | | || || || | | |||
Sbjct 1167740 AATTCCTTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAAC 1167681
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| | ||| ||||| || || || | |||||| ||||||||||||||
Sbjct 1167680 TTCCAATGTGATGGTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1167633
>seq1104
Length=1074228
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/200 (71%), Gaps = 3/200 (2%)
Strand=Plus/Minus
Query 48537 CCTTT-TGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
||||| |||||||||||||| | | | || ||| | ||||||||||| || || || |
Sbjct 391035 CCTTTCTGAATGTTGTAATCGGAAAGAGTG-CGCCCATCCTCCAGCTGTTTGCCAGCGAA 390977
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654
|| | ||||| ||||| || | | ||||||||| || || ||| | |
Sbjct 390976 GATGAGCCGCTGTTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATT 390917
Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714
| | ||||| |||| | ||| ||| | || ||||| ||||| ||||| ||||||||
Sbjct 390916 CTCGATGGTGTCGGAGGCCTCTACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTCAC 390857
Query 48715 AAAAATCTGCATCGTGTCTT 48734
||| |||||||| || |||
Sbjct 390856 AAAGATCTGCATAATGGCTT 390837
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420894330595511
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |