Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq5900 132 3e-26 seq715 127 1e-24 seq206 127 1e-24 seq5686 118 6e-22 seq832 118 6e-22 >seq5900 Length=1197877 Score = 132 bits (146), Expect = 3e-26 Identities = 91/101 (90%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 11431 ATATA-GAATTAATAA-AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||| ||||||| || |||| |||||||||||||| |||||||||| ||||||||| Sbjct 762735 ATATAAGAATTAAAAAGAAAAAAAAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCG 762794 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||||||||||||||||||| Sbjct 762795 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 762835 >seq715 Length=1327288 Score = 127 bits (140), Expect = 1e-24 Identities = 80/87 (92%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| |||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 580373 AAAAAAAAAAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 580314 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||||||||| Sbjct 580313 GCTCTAACCAACTGAGCTAATGGGCCG 580287 >seq206 Length=1960472 Score = 127 bits (140), Expect = 1e-24 Identities = 91/103 (88%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 11427 GGAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 |||||| |||||| || |||| || | ||||||||||| |||||||||| ||||||| Sbjct 1827904 GGAAAT-TAGAATAAA-AAAAGATAAGTTTGGCCCATGAGGGGATCGAACCCGCGACCTT 1827961 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||| |||||||||||||||||||| Sbjct 1827962 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 1828004 >seq5686 Length=2262380 Score = 118 bits (130), Expect = 6e-22 Identities = 81/91 (89%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| ||||| | | ||||||||||| |||||||||| ||||||||||||||||||| Sbjct 46395 TTAAAAAAAATT--ACTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 46338 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 46337 ACGACGCTCTAACCAACTGAGCTAATGGGCC 46307 Score = 109 bits (120), Expect = 3e-19 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||| |||||| | ||||||||| |||||||||| |||||||||||||||||| Sbjct 46759 ATTAGAAAAAAAAAGAGATGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAG 46700 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| |||||||||||||||||||| Sbjct 46699 CACGACGCTCTAACCAACTGAGCTAATGGGCC 46668 >seq832 Length=2970 Score = 118 bits (130), Expect = 6e-22 Identities = 78/86 (91%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 1310 AAAAAAT--ATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 1253 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 1252 GCTCTAACCAACTGAGCTAATGGGCC 1227 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261269673725836