Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq68007 143 2e-29 seq5117 141 8e-29 seq52431 131 2e-25 seq5959 129 5e-25 seq1104 89.7 5e-13 seq514 87.8 2e-12 >seq68007 Length=840 Score = 143 bits (158), Expect = 2e-29 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || |||||||| | |||| |||| || | || ||||||||||| | Sbjct 252 AAAAATTTGCATTCCTCCTCGAAGGCGCAGAACCAGATGAAGTGTTGATTCCTTTTGAAT 193 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 |||||| ||| | ||| || ||||||||| ||||| || |||| || || | ||| Sbjct 192 GTTATAGTCGGAAAGAGTTCTGCCATCCTCCAGTTGTTTGCCAGCAAAAATCAAACGTTG 133 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 |||||||| ||||| || |||||||| | ||||| ||||| || | | ||||| Sbjct 132 TTGATCTGGGGGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATTGTGTC 73 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || |||| ||||||||||| || ||||||||||| || ||||||||||| Sbjct 72 TGAAGCTTCAACTTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTTACGAAGATCTGCAT 13 Query 95008 GC 95009 || Sbjct 12 GC 11 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | | ||| || || ||||| | |||||||||||||| | ||| |||||| Sbjct 467 CCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGAA 408 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | || || |||||||| || | |||||||| | || ||||| || || Sbjct 407 AGAGTCCTACCGTCTTCTAGCTGTTTCCCTGCGAAGATTAAACGCTGTTGATCAGGTGGG 348 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || |||||||| || | ||||| || || ||| | | || || | || || Sbjct 347 ATTCCTTCTTTATCTTGTATTTTGGCTTTTACGTTTTCTATGGTATCCGAAGCTTCAACT 288 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || || ||||| || || ||||| |||||||| || ||||| Sbjct 287 TCAAGGGTAATTGTTTTGCCGGTGAGAGTCTTCACAAAAATTTGCAT 241 >seq5117 Length=2329582 Score = 141 bits (156), Expect = 8e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || ||| ||||| ||||| || ||||| ||||| | || ||||| || ||| Sbjct 1167392 TCTCAAAACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGACAATGTGCGTCC 1167333 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 || || |||||||||||| ||||||| ||||| || ||||| ||||||||||||||||| Sbjct 1167332 GTCTTCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGATCGGGAGGAATACCTTCTTT 1167273 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | |||||| ||||| ||| ||| ||||| | ||||| || | ||||| Sbjct 1167272 GTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGAT 1167213 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| ||||| || | |||||| || || |||||||| Sbjct 1167212 GGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 1167177 Score = 140 bits (154), Expect = 3e-28 Identities = 161/215 (75%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 94795 CAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA-- 94852 ||| ||||| |||| ||| ||||||||||| | ||||||||| || |||| || Sbjct 1167845 CAAAACCAAATGCAGAGTGGATTCCTTTTGAATGTTATAATCAGACA--GTGTGCGACCG 1167788 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || || |||||||| ||||||| ||||| || |||||||||||||| ||||| ||| Sbjct 1167787 TCTTCGAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATTCCTTCCTTG 1167728 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||| || ||||| ||| ||||| | || || || | |||||| Sbjct 1167727 TCCTGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAACTTCCAATGTGATG 1167668 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| || | |||||| ||||| |||||||| Sbjct 1167667 GTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1167633 Score = 136 bits (150), Expect = 4e-27 Identities = 161/217 (74%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTT-TTGCACGTTATAATCGCTCATAGTGTTGG 94850 || ||| || || || || ||||||||||| ||| | || ||||| || ||| Sbjct 1167164 TCTCAAAACTAAATGTAACGTAGATTCCTTCTTGAATATTGTAATCAGACAATGTGCGTC 1167105 Query 94851 AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 || || || ||||||||| ||||||| ||||| |||||||| ||||||||||| |||| Sbjct 1167104 CGTCTTCGAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGAATACCCTCTT 1167045 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | |||||| ||||| ||| ||| ||||| | ||||| || | |||| Sbjct 1167044 TGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGA 1166985 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| ||||| |||||||| || || |||||||| Sbjct 1166984 TAGTTTTGCCAGTGAGAGTTTTGACGAAAATCTGCAT 1166948 Score = 131 bits (144), Expect = 2e-25 Identities = 173/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || || |||| ||| || | ||||||||||| || |||||||| || | Sbjct 1167644 AAAAATCTGCATACCACCTCGCAAACGGAGAACCAAGTGCAAGGTCGATTCCTTCTGAAT 1167585 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 |||||||| | ||| | || || || || ||||| ||||||| || || || Sbjct 1167584 ATTATAATCTGAGAGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTG 1167525 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 |||||| ||||| || ||||||||||| | |||||| || || || ||| ||||| Sbjct 1167524 CTGATCCGGAGGGATTCCTTCTTTGTCCTGAATTTTAGCTTTAACATTCTCGATCGTGTC 1167465 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || | ||||| ||||| |||||||| ||||| ||||| |||||||| Sbjct 1167464 TGATGCTTCGACTTCCAGAGTGATCGTTTTACCAGTAAGTGTTTTGACAAAAATCTGCAT 1167405 Score = 123 bits (136), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 ||||| ||||| || ||||| || || | ||| ||||| |||| ||| | ||| | Sbjct 1165232 ACCAAATGCAATGTTGATTCTTTCTGAATGTTGTAATCAG--ATAGAGTTCGGCCATCTT 1165175 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | |||||||||||| | ||||| || || |||||||||||||| || ||||| || || | Sbjct 1165174 CGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCCTTATCCT 1165115 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 |||||| || ||||| ||| ||||| | || || || | |||||||| | Sbjct 1165114 GAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAACTTCCAATGTGATGGTCT 1165055 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || | |||||| ||||| |||||||| Sbjct 1165054 TTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1165024 Score = 122 bits (134), Expect = 8e-23 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || || |||| ||| || | ||||||||||| || |||||||| || | Sbjct 1165035 AAAAATCTGCATACCACCTCGCAAACGGAGAACCAAGTGCAAGGTCGATTCCTTCTGAAT 1164976 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 |||||||| | ||| | || || || || ||||| ||||||| |||||||| Sbjct 1164975 ATTATAATCTGAGAGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTG 1164916 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||||| ||||| || ||||||||||| | |||||| || |||||| ||| ||||| Sbjct 1164915 TTGATCCGGAGGGATGCCTTCTTTGTCCTGAATTTTCGCTTTGACGTTCTCGATCGTGTC 1164856 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | || || || ||||| || | ||||| || ||||||||||| Sbjct 1164855 CGAAGCTTCTACCTCCAAAGTAATTGTCTTTCCCGTCAAGGTTTTAACGAAGATCTGCAT 1164796 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/120 (78%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || ||| ||||| ||||| || ||||| || || | ||||||||| ||| ||| || Sbjct 1166935 TCTCAAAACCAAATGCAATGTGGATTCTTTCTGAATGTTATAATCAG--ATAATGTGCGA 1166878 Query 94852 --ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCT 94909 ||| || || ||||||||| ||||||| ||||| |||||||| ||||||||||| ||| Sbjct 1166877 CCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGAATACCCTCT 1166818 >seq52431 Length=384 Score = 131 bits (144), Expect = 2e-25 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || |||||||| | ||||| |||| || | || ||||||||||| | Sbjct 317 AAAAATTTGCATTCCTCCTCGAAGACGCAAAACCAGATGAAGTGTGGATTCCTTTTGAAT 258 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || ||| | ||| | |||||| || ||||| || |||| || | | || Sbjct 257 GTTGTAGTCGGAAAGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGACGCTG 198 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||||||||||||||| || |||||||| | ||||| ||||| || | | ||||| Sbjct 197 CTGATCTGGAGGAATTCCCTCTTTGTCTTGGATTTTGGCCTTCACATTTTCTATTGTGTC 138 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || |||| ||||||||||| || || ||||| ||||| ||||||||||| Sbjct 137 TGAAGCTTCAACTTCAAGGGTGATGGTTTTACCCGTGAGAGTCTTCACGAAGATCTGCAT 78 Query 95008 GC 95009 || Sbjct 77 GC 76 >seq5959 Length=1871824 Score = 129 bits (142), Expect = 5e-25 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || |||||||| | || | || | || | ||||| ||||| || | ||| | Sbjct 1420629 TTTGCATTCCTCCTCGAAGACGTAGAACTAGATGAAGTGTAGACTCCTTCTGGATGTTGT 1420688 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||| | ||| | ||| ||||| || ||||| ||||||| | | |||||||| Sbjct 1420689 AGTCGGAGAGAGTTCTTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGACGTTGCTGAT 1420748 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 ||||||| |||||||||||||| | || || || ||||| | | ||| |||| Sbjct 1420749 CTGGAGGGATACCTTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTATCAGAAG 1420808 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || |||| ||||||||||||||||| || |||||||||||||| |||||| Sbjct 1420809 CTTCCACCTCAAGAGTGATGGTTTTTCCAGTGAGGGTTTTCACAAAGATTTGCATG 1420864 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| || ||||| || |||| || | | ||||||||||||||||| || ||||| Sbjct 1420480 ATCCTCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGAGGAATTCCCTCTTT 1420539 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| ||||| || | | ||||| | || || |||| || || Sbjct 1420540 GTCCTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGAGTAAT 1420599 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| ||||||||||| ||||||||||| ||||| Sbjct 1420600 GGTTTTGCCAGTAAGAGTCTTCACAAAGATTTGCAT 1420635 >seq1104 Length=1074228 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 94818 CCTTT-TGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAG 94876 ||||| || | ||| |||||| | |||| ||||||||||||||| || | ||| Sbjct 391035 CCTTTCTGAATGTTGTAATCGGAAAGAGTGCGCCCATCCTCCAGCTGTTTGCCAGCGAAG 390976 Query 94877 ATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCG 94936 || | | || |||||||| || || || || ||||| | || || ||||| || Sbjct 390975 ATGAGCCGCTGTTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTC 390916 Query 94937 CCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACA 94996 ||| ||||| | | || || |||| || ||||| || || || || ||||||||| Sbjct 390915 TCGATGGTGTCGGAGGCCTCTACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTCACA 390856 Query 94997 AAGATCTGCAT 95007 ||||||||||| Sbjct 390855 AAGATCTGCAT 390845 >seq514 Length=2723796 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| ||| ||||| |||||||||| ||||||||||| || | ||||| || | Sbjct 26482 CCGCCTCGCAAGCGCAATACCAAGTGCAGCGTAGATTCCTTCTGGATATTATAGTCCGAC 26541 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || || ||| |||| || || || |||| || ||||||||||||||||| ||| Sbjct 26542 AATGTCCTGCCATCTTCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGATCTGGCGGA 26601 Query 94901 ATACCT 94906 || ||| Sbjct 26602 ATTCCT 26607 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 94903 ACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTC 94962 |||||||||||| | |||||| ||||| || ||| || |||| || || || Sbjct 26979 ACCTTCTTTGTCCTGAATTTTCGCCTTCACATTTTCGATTGTATCAGACGCCTCAACCTC 27038 Query 94963 AATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || |||||||| ||||| ||||||||||| ||||||||||||||| Sbjct 27039 AAGGGTGATGGTCTTTCCCGTAAGAGTTTTTACAAAGATCTGCATG 27084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447901685379960