Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_006645.1 Length=21388 Score E Sequences producing significant alignments: (Bits) Value seq6342 154 2e-33 seq7685 149 9e-32 seq66773 147 3e-31 seq38601 147 3e-31 seq8390 141 1e-29 seq5789 138 2e-28 seq62622 136 5e-28 seq12570 129 8e-26 seq6539 129 8e-26 >seq6342 Length=2655192 Score = 154 bits (170), Expect = 2e-33 Identities = 157/209 (75%), Gaps = 27/209 (13%) Strand=Plus/Plus Query 487 GGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCATGTAGTGTATACTATTT 546 |||||||||| | ||||| | | | | |||| ||| |||| ||||||||||| |||| Sbjct 2006392 GGGCATCATGACGCGCAGGACCGAGATTTCAACTTTTGGCCCGCGTAGTGTATACGATTT 2006451 Query 547 TTCTTGCTATGCGGTCGAAAGTACGTTAAAAATTG-------------CGTTGAAA---- 589 ||||| || ||||||||||||||||| |||| | || ||| Sbjct 2006452 TTCTTCATAGCCGGTCGAAAGTACGTTATTAATTTTATTTTTTTTTCACTTTTAAATGTT 2006511 Query 590 -ATAA---------TTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTG 639 || | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2006512 GATGAGCATGTTTTTTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTG 2006571 Query 640 CTGGTCggggggggCAGGCATCAAATACA 668 ||||||||||||||||||||| ||||||| Sbjct 2006572 CTGGTCGGGGGGGGCAGGCATAAAATACA 2006600 >seq7685 Length=197898 Score = 149 bits (164), Expect = 9e-32 Identities = 155/205 (76%), Gaps = 24/205 (12%) Strand=Plus/Plus Query 487 GGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCATGTAGTGTATACTATTT 546 |||||||||| | ||||| | | | | |||| ||| |||| ||||||||||| |||| Sbjct 148601 GGGCATCATGACGCGCAGGACCGAGATTTCAACTTTTGGCCCGCGTAGTGTATACGATTT 148660 Query 547 TTCTTGCTATGCGGTCGAAAGTACGTTAAAAATTGCGTTG----------AAA-----AT 591 ||||| || ||||||||||||||||| |||| || ||| || Sbjct 148661 TTCTTCATAGCCGGTCGAAAGTACGTTATTAATTTTATTTTTTTCACTTTAAATGTTGAT 148720 Query 592 AA--------TTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTGG 643 | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 148721 GAGCATGTTTTTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTGG 148780 Query 644 TCggggggggCAGGCATCAAATACA 668 || |||||||||||||| ||||||| Sbjct 148781 TC-GGGGGGGCAGGCATAAAATACA 148804 >seq66773 Length=1084 Score = 147 bits (162), Expect = 3e-31 Identities = 155/206 (75%), Gaps = 25/206 (12%) Strand=Plus/Plus Query 487 GGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCATGTAGTGTATACTATTT 546 |||||||||| | ||||| | | | | |||| ||| |||| ||||||||||| |||| Sbjct 54 GGGCATCATGACGCGCAGGACCGAGATTTCAACTTTTGGCCCGCGTAGTGTATACGATTT 113 Query 547 TTCTTGCTATGCGGTCGAAAGTACGTTAAAAATTGCGTTG-----------AAA-----A 590 ||||| || ||||||||||||||||| |||| || ||| | Sbjct 114 TTCTTCATAGCCGGTCGAAAGTACGTTATTAATTTTATTTTTTTTCACTTTAAATGTTGA 173 Query 591 TAA--------TTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTG 642 | | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 174 TGAGCATGTTTTTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTG 233 Query 643 GTCggggggggCAGGCATCAAATACA 668 ||| |||||||||||||| ||||||| Sbjct 234 GTC-GGGGGGGCAGGCATAAAATACA 258 >seq38601 Length=349 Score = 147 bits (162), Expect = 3e-31 Identities = 155/206 (75%), Gaps = 25/206 (12%) Strand=Plus/Plus Query 487 GGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCATGTAGTGTATACTATTT 546 |||||||||| | ||||| | | | | |||| ||| |||| ||||||||||| |||| Sbjct 54 GGGCATCATGACGCGCAGGACCGAGATTTCAACTTTTGGCCCGCGTAGTGTATACGATTT 113 Query 547 TTCTTGCTATGCGGTCGAAAGTACGTTAAAAATTGCGTTG-----------AAA-----A 590 ||||| || ||||||||||||||||| |||| || ||| | Sbjct 114 TTCTTCATAGCCGGTCGAAAGTACGTTATTAATTTTATTTTTTTTCACTTTAAATGTTGA 173 Query 591 TAA--------TTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTG 642 | | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 174 TGAGCATGTTTTTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTG 233 Query 643 GTCggggggggCAGGCATCAAATACA 668 ||| |||||||||||||| ||||||| Sbjct 234 GTC-GGGGGGGCAGGCATAAAATACA 258 >seq8390 Length=2844 Score = 141 bits (156), Expect = 1e-29 Identities = 153/206 (74%), Gaps = 24/206 (12%) Strand=Plus/Plus Query 487 GGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCATGTAGTGTATACTATTT 546 |||||||||| | ||||| | | | | |||| ||| |||| ||||||||||| |||| Sbjct 2577 GGGCATCATGACGCGCAGGACCGAGATTTCAACTTTTGGCCCGCGTAGTGTATACGATTT 2636 Query 547 TTCTTGCTATGCGGTCGAAAGTACGTTAAAAATTGCGTTG-----------AAA-----A 590 ||||| || ||||||||||||||||| |||| || ||| | Sbjct 2637 TTCTTCATAGCCGGTCGAAAGTACGTTATTAATTTTATTTTTTTTCACTTTAAATGTTGA 2696 Query 591 TAA--------TTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTG 642 | | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2697 TGAGCATGTTTTTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTG 2756 Query 643 GTCggggggggCAGGCATCAAATACA 668 | |||||||||||||| ||||||| Sbjct 2757 GGTCGGGGGGGCAGGCATAAAATACA 2782 >seq5789 Length=839996 Score = 138 bits (152), Expect = 2e-28 Identities = 153/206 (74%), Gaps = 26/206 (13%) Strand=Plus/Plus Query 487 GGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCATGTAGTGTATACTATTT 546 |||||||||| | ||||| | | | |||| ||| |||| |||||||||||| |||| Sbjct 839768 GGGCATCATGACGCGCAGGACCAAGATTTCAACTTTTGGCCCGTGTAGTGTATACGATTT 839827 Query 547 TTCTTGCTATGCGGTCGAAAGTACGTTAAAAATTGCGTTG-----------AAA-----A 590 ||||| || ||||||||||||| ||| |||| || ||| | Sbjct 839828 TTCTTCATAGCCGGTCGAAAGTACATTATTAATTTTATTTTTTTTCACTTTAAATGTTGA 839887 Query 591 TAA--------TTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTG 642 | | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839888 TGAGCATGTTTTTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTG 839947 Query 643 GTCggggggggCAGGCATCAAATACA 668 ||| ||||||||||||| ||||||| Sbjct 839948 GTC--GGGGGGCAGGCATAAAATACA 839971 >seq62622 Length=1328 Score = 136 bits (150), Expect = 5e-28 Identities = 153/207 (74%), Gaps = 26/207 (13%) Strand=Plus/Plus Query 487 GGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCATGTAGTGTATACTATTT 546 |||||||||| | ||||| | | | | |||| ||| |||| ||||||||||| |||| Sbjct 1078 GGGCATCATGACGCGCAGGACCGAGATTTCAACTTTTGGCCCGCGTAGTGTATACGATTT 1137 Query 547 TTCTTGCTATGCGGTCGAAAGTACGTTAAAAATTGCGTTG------------AAA----- 589 ||||| || ||||||||||||||||| |||| || ||| Sbjct 1138 TTCTTCATAGCCGGTCGAAAGTACGTTATTAATTTTATTTTTTTTTCACTTTAAATGTTG 1197 Query 590 ATAA--------TTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCT 641 || | |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1198 ATGAGCATGTTTTTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAACGAGTGCTGCT 1257 Query 642 GGTCggggggggCAGGCATCAAATACA 668 ||| |||||||||||||| ||||||| Sbjct 1258 GGT-TGGGGGGGCAGGCATAAAATACA 1283 >seq12570 Length=1184 Score = 129 bits (142), Expect = 8e-26 Identities = 151/206 (73%), Gaps = 25/206 (12%) Strand=Plus/Plus Query 487 GGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCATGTAGTGTATACTATTT 546 |||||||||| | ||||| | | | | |||| ||| ||| ||||||||||| |||| Sbjct 459 GGGCATCATGACGCGCAGGACCGAGATTTCAACTTTTGACCCGCGTAGTGTATACGATTT 518 Query 547 TTCTTGCTATGCGGTCGAAAGTACGTTAAAAATTGCGTTG-----------AAA-----A 590 || || || ||||||||||||||||| |||| || ||| | Sbjct 519 TTTTTCATAGCCGGTCGAAAGTACGTTATTAATTTTATTTTTTTTCACTTTAAATGTTGA 578 Query 591 TAA--------TTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTG 642 | | ||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 579 TGAGCATGTTTTTGATGCCTGCCCTCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTG 638 Query 643 GTCggggggggCAGGCATCAAATACA 668 ||| |||||||||| ||| ||||||| Sbjct 639 GTC-GGGGGGGCAGACATAAAATACA 663 >seq6539 Length=13747 Score = 129 bits (142), Expect = 8e-26 Identities = 187/260 (72%), Gaps = 33/260 (13%) Strand=Plus/Minus Query 439 AATAGTATATTACACTACAAGAGCAGAAAGTTGAGATTCCTGCACTGCGGG-CATCATG- 496 ||||||||||||||||||||| || ||||||||| || | || ||||| | ||| ||| Sbjct 498 AATAGTATATTACACTACAAGGGCCGAAAGTTGAATTTTCGGCCCTGCGCGTCATGATGC 439 Query 497 GCA----CGCAGTTCAGGGCTCTCAAATTTCTGCCCATGTAGTGTATACTATTTTTCTTG 552 || || || || | || | | | ||| | | | ||||| ||||||||| Sbjct 438 GCCGAGGCGAAGCCGAGATTTTTCGATTATA-GCCGGTTTT-TATATACGATTTTTCTTC 381 Query 553 CTATGCGGTCGAAAGTACGTTAAAAATTGCGTTG-----------AAA-----ATAA--- 593 || ||||||||||||||||| |||| || ||| || | Sbjct 380 ATAGCCGGTCGAAAGTACGTTATTAATTTTATTTTTTTTCACTTTAAATGTTGATGAGCA 321 Query 594 -----TTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTGGTCggg 648 |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 320 TGTTTTTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTGGTC-GG 262 Query 649 gggggCAGGCATCAAATACA 668 |||||||||||| ||||||| Sbjct 261 GGGGGCAGGCATAAAATACA 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 68268287213643