Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08]
69,511 sequences; 396,024,718 total letters
Query= NC_006662.1
Length=17477
Score E
Sequences producing significant alignments: (Bits) Value
seq7685 228 9e-56
seq6342 226 3e-55
seq5789 217 2e-52
seq62622 214 2e-51
seq8390 212 7e-51
seq12570 206 3e-49
seq66773 185 1e-42
seq38601 185 1e-42
seq6539 129 7e-26
>seq7685
Length=197898
Score = 228 bits (252), Expect = 9e-56
Identities = 230/296 (78%), Gaps = 30/296 (10%)
Strand=Plus/Plus
Query 4738 TTATAGTTTAGAGAAATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCAC 4797
||||||| ||| || |||||||||||||||||||||| |||||| ||| || | || |
Sbjct 148514 TTATAGT--AGA-AATTAGTATATTACACTACAAGGGCCGAAAGT-TGAATTTTCGGCTC 148569
Query 4798 TGCGCGCCAT-ATGC-CCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCT 4855
|||||| ||| |||| ||||||||||||||||||||||||| | ||||| | | | | |
Sbjct 148570 TGCGCGTCATGATGCGCCGAGGCGAAGCCGAGGGCATCATGACGCGCAGGACCGAGATTT 148629
Query 4856 CAAATTTCTGCCCATGTAGTGTATACTAGTTTTCTTACTATGCGGTCGAAAGTACGTTAA 4915
||| ||| |||| ||||||||||| | ||||||| || |||||||||||||||||
Sbjct 148630 CAACTTTTGGCCCGCGTAGTGTATACGATTTTTCTTCATAGCCGGTCGAAAGTACGTTAT 148689
Query 4916 AAATT------------------GCGTTGaaaaaaa-----TTGATGCCTGCCCCCGACA 4952
|||| ||||| | | |||||||||||||||||||
Sbjct 148690 TAATTTTATTTTTTTCACTTTAAATGTTGATGAGCATGTTTTTGATGCCTGCCCCCGACA 148749
Query 4953 TTTGCGGCACGAGCGAAGCGAGTGCTGCTGGTCggggggggCAGGCATCAAATACA 5008
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 148750 TTTGCGGCACGAGCGAAGCGAGTGCTGCTGGTC-GGGGGGGCAGGCATAAAATACA 148804
>seq6342
Length=2655192
Score = 226 bits (250), Expect = 3e-55
Identities = 221/286 (77%), Gaps = 29/286 (10%)
Strand=Plus/Plus
Query 4752 AATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCAT-ATG 4810
||||||||||| |||||||||||| |||||| ||| || | || ||||||| ||| |||
Sbjct 2006315 AATAGTATATTTCACTACAAGGGCCGAAAGTTTGAATTTTCGGCCCTGCGCGTCATGATG 2006374
Query 4811 C-CCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCA 4869
| ||||||||||||||||||||||||| | ||||| | | | | |||| ||| ||||
Sbjct 2006375 CGCCGAGGCGAAGCCGAGGGCATCATGACGCGCAGGACCGAGATTTCAACTTTTGGCCCG 2006434
Query 4870 TGTAGTGTATACTAGTTTTCTTACTATGCGGTCGAAAGTACGTTAAAAATT--------- 4920
||||||||||| | ||||||| || ||||||||||||||||| ||||
Sbjct 2006435 CGTAGTGTATACGATTTTTCTTCATAGCCGGTCGAAAGTACGTTATTAATTTTATTTTTT 2006494
Query 4921 ----GCGTTGaaa-----aaaa---------TTGATGCCTGCCCCCGACATTTGCGGCAC 4962
| || ||| | | |||||||||||||||||||||||||||||
Sbjct 2006495 TTTCACTTTTAAATGTTGATGAGCATGTTTTTTGATGCCTGCCCCCGACATTTGCGGCAC 2006554
Query 4963 GAGCGAAGCGAGTGCTGCTGGTCggggggggCAGGCATCAAATACA 5008
|||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2006555 GAGCGAAGCGAGTGCTGCTGGTCGGGGGGGGCAGGCATAAAATACA 2006600
>seq5789
Length=839996
Score = 217 bits (240), Expect = 2e-52
Identities = 218/283 (77%), Gaps = 29/283 (10%)
Strand=Plus/Plus
Query 4752 AATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCAT-ATG 4810
|||||||||||||||||||||||| |||||| ||| || | || ||||||| ||| |||
Sbjct 839692 AATAGTATATTACACTACAAGGGCCGAAAGT-TGAATTTTCGGCCCTGCGCGTCATGATG 839750
Query 4811 C-CCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCA 4869
| ||||||||||||||||||||||||| | ||||| | | | |||| ||| ||||
Sbjct 839751 CGCCGAGGCGAAGCCGAGGGCATCATGACGCGCAGGACCAAGATTTCAACTTTTGGCCCG 839810
Query 4870 TGTAGTGTATACTAGTTTTCTTACTATGCGGTCGAAAGTACGTTAAAAATT--------- 4920
|||||||||||| | ||||||| || ||||||||||||| ||| ||||
Sbjct 839811 TGTAGTGTATACGATTTTTCTTCATAGCCGGTCGAAAGTACATTATTAATTTTATTTTTT 839870
Query 4921 ----------GCGTTGaaaaaaa-----TTGATGCCTGCCCCCGACATTTGCGGCACGAG 4965
||||| | | ||||||||||||||||||||||||||||||||
Sbjct 839871 TTCACTTTAAATGTTGATGAGCATGTTTTTGATGCCTGCCCCCGACATTTGCGGCACGAG 839930
Query 4966 CGAAGCGAGTGCTGCTGGTCggggggggCAGGCATCAAATACA 5008
|||||||||||||||||||| ||||||||||||| |||||||
Sbjct 839931 CGAAGCGAGTGCTGCTGGTC--GGGGGGCAGGCATAAAATACA 839971
>seq62622
Length=1328
Score = 214 bits (236), Expect = 2e-51
Identities = 218/284 (77%), Gaps = 29/284 (10%)
Strand=Plus/Plus
Query 4752 AATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCAT-ATG 4810
|||||||||||||||||||||||| |||||| ||| || | || ||||||| ||| |||
Sbjct 1002 AATAGTATATTACACTACAAGGGCCGAAAGT-TGAATTTTCGGCCCTGCGCGTCATGATG 1060
Query 4811 C-CCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCA 4869
| ||||||||||||||||||||||||| | ||||| | | | | |||| ||| ||||
Sbjct 1061 CGCCGAGGCGAAGCCGAGGGCATCATGACGCGCAGGACCGAGATTTCAACTTTTGGCCCG 1120
Query 4870 TGTAGTGTATACTAGTTTTCTTACTATGCGGTCGAAAGTACGTTAAAAATT--------- 4920
||||||||||| | ||||||| || ||||||||||||||||| ||||
Sbjct 1121 CGTAGTGTATACGATTTTTCTTCATAGCCGGTCGAAAGTACGTTATTAATTTTATTTTTT 1180
Query 4921 -----------GCGTTGaaaaaaa-----TTGATGCCTGCCCCCGACATTTGCGGCACGA 4964
||||| | | |||||||||||||||||||||||||||||||
Sbjct 1181 TTTCACTTTAAATGTTGATGAGCATGTTTTTGATGCCTGCCCCCGACATTTGCGGCACGA 1240
Query 4965 GCGAAGCGAGTGCTGCTGGTCggggggggCAGGCATCAAATACA 5008
||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 1241 GCGAAACGAGTGCTGCTGGT-TGGGGGGGCAGGCATAAAATACA 1283
>seq8390
Length=2844
Score = 212 bits (234), Expect = 7e-51
Identities = 217/284 (76%), Gaps = 27/284 (10%)
Strand=Plus/Plus
Query 4751 AAATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCAT-AT 4809
|||||||| ||||||||||||| || |||||| ||| || | || ||||||| ||| ||
Sbjct 2500 AAATAGTACATTACACTACAAGAGCCGAAAGT-TGAATTTTCGGCCCTGCGCGTCATGAT 2558
Query 4810 GC-CCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCC 4868
|| ||||||||||||||||||||||||| | ||||| | | | | |||| ||| ||||
Sbjct 2559 GCGCCGAGGCGAAGCCGAGGGCATCATGACGCGCAGGACCGAGATTTCAACTTTTGGCCC 2618
Query 4869 ATGTAGTGTATACTAGTTTTCTTACTATGCGGTCGAAAGTACGTTAAAAATT-------- 4920
||||||||||| | ||||||| || ||||||||||||||||| ||||
Sbjct 2619 GCGTAGTGTATACGATTTTTCTTCATAGCCGGTCGAAAGTACGTTATTAATTTTATTTTT 2678
Query 4921 -----------GCGTTGaaaaaaa-----TTGATGCCTGCCCCCGACATTTGCGGCACGA 4964
||||| | | |||||||||||||||||||||||||||||||
Sbjct 2679 TTTCACTTTAAATGTTGATGAGCATGTTTTTGATGCCTGCCCCCGACATTTGCGGCACGA 2738
Query 4965 GCGAAGCGAGTGCTGCTGGTCggggggggCAGGCATCAAATACA 5008
||||||||||||||||||| |||||||||||||| |||||||
Sbjct 2739 GCGAAGCGAGTGCTGCTGGGTCGGGGGGGCAGGCATAAAATACA 2782
>seq12570
Length=1184
Score = 206 bits (228), Expect = 3e-49
Identities = 216/283 (76%), Gaps = 28/283 (10%)
Strand=Plus/Plus
Query 4752 AATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCAT-ATG 4810
|||||||||||||||||||||||| |||||| ||| || | || ||||||| ||| |||
Sbjct 383 AATAGTATATTACACTACAAGGGCCGAAAGT-TGAATTTTCGGCCCTGCGCGTCATGATG 441
Query 4811 C-CCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCA 4869
| ||||||||||||||||||||||||| | ||||| | | | | |||| ||| |||
Sbjct 442 CGCCGAGGCGAAGCCGAGGGCATCATGACGCGCAGGACCGAGATTTCAACTTTTGACCCG 501
Query 4870 TGTAGTGTATACTAGTTTTCTTACTATGCGGTCGAAAGTACGTTAAAAATT--------- 4920
||||||||||| | |||| || || ||||||||||||||||| ||||
Sbjct 502 CGTAGTGTATACGATTTTTTTTCATAGCCGGTCGAAAGTACGTTATTAATTTTATTTTTT 561
Query 4921 ----------GCGTTGaaaaaaa-----TTGATGCCTGCCCCCGACATTTGCGGCACGAG 4965
||||| | | ||||||||||||| ||||||||||||||||||
Sbjct 562 TTCACTTTAAATGTTGATGAGCATGTTTTTGATGCCTGCCCTCGACATTTGCGGCACGAG 621
Query 4966 CGAAGCGAGTGCTGCTGGTCggggggggCAGGCATCAAATACA 5008
|||||||||||||||||||| |||||||||| ||| |||||||
Sbjct 622 CGAAGCGAGTGCTGCTGGTC-GGGGGGGCAGACATAAAATACA 663
>seq66773
Length=1084
Score = 185 bits (204), Expect = 1e-42
Identities = 196/258 (76%), Gaps = 28/258 (11%)
Strand=Plus/Plus
Query 4777 GAAAGTCTGAGATTCCTGCACTGCGCGCCAT-ATGC-CCGAGGCGAAGCCGAGGGCATCA 4834
|||||| ||| || | || ||||||| ||| |||| |||||||||||||||||||||||
Sbjct 3 GAAAGT-TGAATTTTCGGCTCTGCGCGTCATGATGCGCCGAGGCGAAGCCGAGGGCATCA 61
Query 4835 TGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCATGTAGTGTATACTAGTTTTCTTACT 4894
|| | ||||| | | | | |||| ||| |||| ||||||||||| | ||||||| |
Sbjct 62 TGACGCGCAGGACCGAGATTTCAACTTTTGGCCCGCGTAGTGTATACGATTTTTCTTCAT 121
Query 4895 ATGCGGTCGAAAGTACGTTAAAAATTGC-------------------GTTGaaaaaaaT- 4934
| ||||||||||||||||| |||| ||||| | ||
Sbjct 122 AGCCGGTCGAAAGTACGTTATTAATTTTATTTTTTTTCACTTTAAATGTTGATGAGCATG 181
Query 4935 ----TGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTGGTCggggg 4990
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 182 TTTTTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTGGTC-GGGG 240
Query 4991 gggCAGGCATCAAATACA 5008
|||||||||| |||||||
Sbjct 241 GGGCAGGCATAAAATACA 258
>seq38601
Length=349
Score = 185 bits (204), Expect = 1e-42
Identities = 196/258 (76%), Gaps = 28/258 (11%)
Strand=Plus/Plus
Query 4777 GAAAGTCTGAGATTCCTGCACTGCGCGCCAT-ATGC-CCGAGGCGAAGCCGAGGGCATCA 4834
|||||| ||| || | || ||||||| ||| |||| |||||||||||||||||||||||
Sbjct 3 GAAAGT-TGAATTTTCGGCCCTGCGCGTCATGATGCGCCGAGGCGAAGCCGAGGGCATCA 61
Query 4835 TGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCATGTAGTGTATACTAGTTTTCTTACT 4894
|| | ||||| | | | | |||| ||| |||| ||||||||||| | ||||||| |
Sbjct 62 TGACGCGCAGGACCGAGATTTCAACTTTTGGCCCGCGTAGTGTATACGATTTTTCTTCAT 121
Query 4895 ATGCGGTCGAAAGTACGTTAAAAATTGC-------------------GTTGaaaaaaaT- 4934
| ||||||||||||||||| |||| ||||| | ||
Sbjct 122 AGCCGGTCGAAAGTACGTTATTAATTTTATTTTTTTTCACTTTAAATGTTGATGAGCATG 181
Query 4935 ----TGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTGGTCggggg 4990
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 182 TTTTTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTGGTC-GGGG 240
Query 4991 gggCAGGCATCAAATACA 5008
|||||||||| |||||||
Sbjct 241 GGGCAGGCATAAAATACA 258
>seq6539
Length=13747
Score = 129 bits (142), Expect = 7e-26
Identities = 198/283 (70%), Gaps = 52/283 (18%)
Strand=Plus/Minus
Query 4752 AATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCAT-ATG 4810
|||||||||||||||||||||||| |||||| ||| || | || ||||||| ||| |||
Sbjct 498 AATAGTATATTACACTACAAGGGCCGAAAGT-TGAATTTTCGGCCCTGCGCGTCATGATG 440
Query 4811 C-CCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCA 4869
| |||||||||||||||| || | || | | | |||
Sbjct 439 CGCCGAGGCGAAGCCGAGA----------------TT------TTTCGATTATA-GCCGG 403
Query 4870 TGTAGTGTATACTAGTTTTCTTACTATGCGGTCGAAAGTACGTTAAAAATTGC------- 4922
| | | ||||| | ||||||| || ||||||||||||||||| ||||
Sbjct 402 TTTT-TATATACGATTTTTCTTCATAGCCGGTCGAAAGTACGTTATTAATTTTATTTTTT 344
Query 4923 ------------GTTGaaaaaaaT-----TGATGCCTGCCCCCGACATTTGCGGCACGAG 4965
||||| | || |||||||||||||||||||||||||||||||
Sbjct 343 TTCACTTTAAATGTTGATGAGCATGTTTTTGATGCCTGCCCCCGACATTTGCGGCACGAG 284
Query 4966 CGAAGCGAGTGCTGCTGGTCggggggggCAGGCATCAAATACA 5008
|||||||||||||||||||| |||||||||||||| |||||||
Sbjct 283 CGAAGCGAGTGCTGCTGGTC-GGGGGGGCAGGCATAAAATACA 242
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 55763145941920
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