Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_006662.1 Length=17477 Score E Sequences producing significant alignments: (Bits) Value seq7685 228 9e-56 seq6342 226 3e-55 seq5789 217 2e-52 seq62622 214 2e-51 seq8390 212 7e-51 seq12570 206 3e-49 seq66773 185 1e-42 seq38601 185 1e-42 seq6539 129 7e-26 >seq7685 Length=197898 Score = 228 bits (252), Expect = 9e-56 Identities = 230/296 (78%), Gaps = 30/296 (10%) Strand=Plus/Plus Query 4738 TTATAGTTTAGAGAAATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCAC 4797 ||||||| ||| || |||||||||||||||||||||| |||||| ||| || | || | Sbjct 148514 TTATAGT--AGA-AATTAGTATATTACACTACAAGGGCCGAAAGT-TGAATTTTCGGCTC 148569 Query 4798 TGCGCGCCAT-ATGC-CCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCT 4855 |||||| ||| |||| ||||||||||||||||||||||||| | ||||| | | | | | Sbjct 148570 TGCGCGTCATGATGCGCCGAGGCGAAGCCGAGGGCATCATGACGCGCAGGACCGAGATTT 148629 Query 4856 CAAATTTCTGCCCATGTAGTGTATACTAGTTTTCTTACTATGCGGTCGAAAGTACGTTAA 4915 ||| ||| |||| ||||||||||| | ||||||| || ||||||||||||||||| Sbjct 148630 CAACTTTTGGCCCGCGTAGTGTATACGATTTTTCTTCATAGCCGGTCGAAAGTACGTTAT 148689 Query 4916 AAATT------------------GCGTTGaaaaaaa-----TTGATGCCTGCCCCCGACA 4952 |||| ||||| | | ||||||||||||||||||| Sbjct 148690 TAATTTTATTTTTTTCACTTTAAATGTTGATGAGCATGTTTTTGATGCCTGCCCCCGACA 148749 Query 4953 TTTGCGGCACGAGCGAAGCGAGTGCTGCTGGTCggggggggCAGGCATCAAATACA 5008 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 148750 TTTGCGGCACGAGCGAAGCGAGTGCTGCTGGTC-GGGGGGGCAGGCATAAAATACA 148804 >seq6342 Length=2655192 Score = 226 bits (250), Expect = 3e-55 Identities = 221/286 (77%), Gaps = 29/286 (10%) Strand=Plus/Plus Query 4752 AATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCAT-ATG 4810 ||||||||||| |||||||||||| |||||| ||| || | || ||||||| ||| ||| Sbjct 2006315 AATAGTATATTTCACTACAAGGGCCGAAAGTTTGAATTTTCGGCCCTGCGCGTCATGATG 2006374 Query 4811 C-CCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCA 4869 | ||||||||||||||||||||||||| | ||||| | | | | |||| ||| |||| Sbjct 2006375 CGCCGAGGCGAAGCCGAGGGCATCATGACGCGCAGGACCGAGATTTCAACTTTTGGCCCG 2006434 Query 4870 TGTAGTGTATACTAGTTTTCTTACTATGCGGTCGAAAGTACGTTAAAAATT--------- 4920 ||||||||||| | ||||||| || ||||||||||||||||| |||| Sbjct 2006435 CGTAGTGTATACGATTTTTCTTCATAGCCGGTCGAAAGTACGTTATTAATTTTATTTTTT 2006494 Query 4921 ----GCGTTGaaa-----aaaa---------TTGATGCCTGCCCCCGACATTTGCGGCAC 4962 | || ||| | | ||||||||||||||||||||||||||||| Sbjct 2006495 TTTCACTTTTAAATGTTGATGAGCATGTTTTTTGATGCCTGCCCCCGACATTTGCGGCAC 2006554 Query 4963 GAGCGAAGCGAGTGCTGCTGGTCggggggggCAGGCATCAAATACA 5008 |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2006555 GAGCGAAGCGAGTGCTGCTGGTCGGGGGGGGCAGGCATAAAATACA 2006600 >seq5789 Length=839996 Score = 217 bits (240), Expect = 2e-52 Identities = 218/283 (77%), Gaps = 29/283 (10%) Strand=Plus/Plus Query 4752 AATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCAT-ATG 4810 |||||||||||||||||||||||| |||||| ||| || | || ||||||| ||| ||| Sbjct 839692 AATAGTATATTACACTACAAGGGCCGAAAGT-TGAATTTTCGGCCCTGCGCGTCATGATG 839750 Query 4811 C-CCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCA 4869 | ||||||||||||||||||||||||| | ||||| | | | |||| ||| |||| Sbjct 839751 CGCCGAGGCGAAGCCGAGGGCATCATGACGCGCAGGACCAAGATTTCAACTTTTGGCCCG 839810 Query 4870 TGTAGTGTATACTAGTTTTCTTACTATGCGGTCGAAAGTACGTTAAAAATT--------- 4920 |||||||||||| | ||||||| || ||||||||||||| ||| |||| Sbjct 839811 TGTAGTGTATACGATTTTTCTTCATAGCCGGTCGAAAGTACATTATTAATTTTATTTTTT 839870 Query 4921 ----------GCGTTGaaaaaaa-----TTGATGCCTGCCCCCGACATTTGCGGCACGAG 4965 ||||| | | |||||||||||||||||||||||||||||||| Sbjct 839871 TTCACTTTAAATGTTGATGAGCATGTTTTTGATGCCTGCCCCCGACATTTGCGGCACGAG 839930 Query 4966 CGAAGCGAGTGCTGCTGGTCggggggggCAGGCATCAAATACA 5008 |||||||||||||||||||| ||||||||||||| ||||||| Sbjct 839931 CGAAGCGAGTGCTGCTGGTC--GGGGGGCAGGCATAAAATACA 839971 >seq62622 Length=1328 Score = 214 bits (236), Expect = 2e-51 Identities = 218/284 (77%), Gaps = 29/284 (10%) Strand=Plus/Plus Query 4752 AATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCAT-ATG 4810 |||||||||||||||||||||||| |||||| ||| || | || ||||||| ||| ||| Sbjct 1002 AATAGTATATTACACTACAAGGGCCGAAAGT-TGAATTTTCGGCCCTGCGCGTCATGATG 1060 Query 4811 C-CCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCA 4869 | ||||||||||||||||||||||||| | ||||| | | | | |||| ||| |||| Sbjct 1061 CGCCGAGGCGAAGCCGAGGGCATCATGACGCGCAGGACCGAGATTTCAACTTTTGGCCCG 1120 Query 4870 TGTAGTGTATACTAGTTTTCTTACTATGCGGTCGAAAGTACGTTAAAAATT--------- 4920 ||||||||||| | ||||||| || ||||||||||||||||| |||| Sbjct 1121 CGTAGTGTATACGATTTTTCTTCATAGCCGGTCGAAAGTACGTTATTAATTTTATTTTTT 1180 Query 4921 -----------GCGTTGaaaaaaa-----TTGATGCCTGCCCCCGACATTTGCGGCACGA 4964 ||||| | | ||||||||||||||||||||||||||||||| Sbjct 1181 TTTCACTTTAAATGTTGATGAGCATGTTTTTGATGCCTGCCCCCGACATTTGCGGCACGA 1240 Query 4965 GCGAAGCGAGTGCTGCTGGTCggggggggCAGGCATCAAATACA 5008 ||||| |||||||||||||| |||||||||||||| ||||||| Sbjct 1241 GCGAAACGAGTGCTGCTGGT-TGGGGGGGCAGGCATAAAATACA 1283 >seq8390 Length=2844 Score = 212 bits (234), Expect = 7e-51 Identities = 217/284 (76%), Gaps = 27/284 (10%) Strand=Plus/Plus Query 4751 AAATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCAT-AT 4809 |||||||| ||||||||||||| || |||||| ||| || | || ||||||| ||| || Sbjct 2500 AAATAGTACATTACACTACAAGAGCCGAAAGT-TGAATTTTCGGCCCTGCGCGTCATGAT 2558 Query 4810 GC-CCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCC 4868 || ||||||||||||||||||||||||| | ||||| | | | | |||| ||| |||| Sbjct 2559 GCGCCGAGGCGAAGCCGAGGGCATCATGACGCGCAGGACCGAGATTTCAACTTTTGGCCC 2618 Query 4869 ATGTAGTGTATACTAGTTTTCTTACTATGCGGTCGAAAGTACGTTAAAAATT-------- 4920 ||||||||||| | ||||||| || ||||||||||||||||| |||| Sbjct 2619 GCGTAGTGTATACGATTTTTCTTCATAGCCGGTCGAAAGTACGTTATTAATTTTATTTTT 2678 Query 4921 -----------GCGTTGaaaaaaa-----TTGATGCCTGCCCCCGACATTTGCGGCACGA 4964 ||||| | | ||||||||||||||||||||||||||||||| Sbjct 2679 TTTCACTTTAAATGTTGATGAGCATGTTTTTGATGCCTGCCCCCGACATTTGCGGCACGA 2738 Query 4965 GCGAAGCGAGTGCTGCTGGTCggggggggCAGGCATCAAATACA 5008 ||||||||||||||||||| |||||||||||||| ||||||| Sbjct 2739 GCGAAGCGAGTGCTGCTGGGTCGGGGGGGCAGGCATAAAATACA 2782 >seq12570 Length=1184 Score = 206 bits (228), Expect = 3e-49 Identities = 216/283 (76%), Gaps = 28/283 (10%) Strand=Plus/Plus Query 4752 AATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCAT-ATG 4810 |||||||||||||||||||||||| |||||| ||| || | || ||||||| ||| ||| Sbjct 383 AATAGTATATTACACTACAAGGGCCGAAAGT-TGAATTTTCGGCCCTGCGCGTCATGATG 441 Query 4811 C-CCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCA 4869 | ||||||||||||||||||||||||| | ||||| | | | | |||| ||| ||| Sbjct 442 CGCCGAGGCGAAGCCGAGGGCATCATGACGCGCAGGACCGAGATTTCAACTTTTGACCCG 501 Query 4870 TGTAGTGTATACTAGTTTTCTTACTATGCGGTCGAAAGTACGTTAAAAATT--------- 4920 ||||||||||| | |||| || || ||||||||||||||||| |||| Sbjct 502 CGTAGTGTATACGATTTTTTTTCATAGCCGGTCGAAAGTACGTTATTAATTTTATTTTTT 561 Query 4921 ----------GCGTTGaaaaaaa-----TTGATGCCTGCCCCCGACATTTGCGGCACGAG 4965 ||||| | | ||||||||||||| |||||||||||||||||| Sbjct 562 TTCACTTTAAATGTTGATGAGCATGTTTTTGATGCCTGCCCTCGACATTTGCGGCACGAG 621 Query 4966 CGAAGCGAGTGCTGCTGGTCggggggggCAGGCATCAAATACA 5008 |||||||||||||||||||| |||||||||| ||| ||||||| Sbjct 622 CGAAGCGAGTGCTGCTGGTC-GGGGGGGCAGACATAAAATACA 663 >seq66773 Length=1084 Score = 185 bits (204), Expect = 1e-42 Identities = 196/258 (76%), Gaps = 28/258 (11%) Strand=Plus/Plus Query 4777 GAAAGTCTGAGATTCCTGCACTGCGCGCCAT-ATGC-CCGAGGCGAAGCCGAGGGCATCA 4834 |||||| ||| || | || ||||||| ||| |||| ||||||||||||||||||||||| Sbjct 3 GAAAGT-TGAATTTTCGGCTCTGCGCGTCATGATGCGCCGAGGCGAAGCCGAGGGCATCA 61 Query 4835 TGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCATGTAGTGTATACTAGTTTTCTTACT 4894 || | ||||| | | | | |||| ||| |||| ||||||||||| | ||||||| | Sbjct 62 TGACGCGCAGGACCGAGATTTCAACTTTTGGCCCGCGTAGTGTATACGATTTTTCTTCAT 121 Query 4895 ATGCGGTCGAAAGTACGTTAAAAATTGC-------------------GTTGaaaaaaaT- 4934 | ||||||||||||||||| |||| ||||| | || Sbjct 122 AGCCGGTCGAAAGTACGTTATTAATTTTATTTTTTTTCACTTTAAATGTTGATGAGCATG 181 Query 4935 ----TGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTGGTCggggg 4990 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 182 TTTTTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTGGTC-GGGG 240 Query 4991 gggCAGGCATCAAATACA 5008 |||||||||| ||||||| Sbjct 241 GGGCAGGCATAAAATACA 258 >seq38601 Length=349 Score = 185 bits (204), Expect = 1e-42 Identities = 196/258 (76%), Gaps = 28/258 (11%) Strand=Plus/Plus Query 4777 GAAAGTCTGAGATTCCTGCACTGCGCGCCAT-ATGC-CCGAGGCGAAGCCGAGGGCATCA 4834 |||||| ||| || | || ||||||| ||| |||| ||||||||||||||||||||||| Sbjct 3 GAAAGT-TGAATTTTCGGCCCTGCGCGTCATGATGCGCCGAGGCGAAGCCGAGGGCATCA 61 Query 4835 TGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCATGTAGTGTATACTAGTTTTCTTACT 4894 || | ||||| | | | | |||| ||| |||| ||||||||||| | ||||||| | Sbjct 62 TGACGCGCAGGACCGAGATTTCAACTTTTGGCCCGCGTAGTGTATACGATTTTTCTTCAT 121 Query 4895 ATGCGGTCGAAAGTACGTTAAAAATTGC-------------------GTTGaaaaaaaT- 4934 | ||||||||||||||||| |||| ||||| | || Sbjct 122 AGCCGGTCGAAAGTACGTTATTAATTTTATTTTTTTTCACTTTAAATGTTGATGAGCATG 181 Query 4935 ----TGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTGGTCggggg 4990 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 182 TTTTTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTGGTC-GGGG 240 Query 4991 gggCAGGCATCAAATACA 5008 |||||||||| ||||||| Sbjct 241 GGGCAGGCATAAAATACA 258 >seq6539 Length=13747 Score = 129 bits (142), Expect = 7e-26 Identities = 198/283 (70%), Gaps = 52/283 (18%) Strand=Plus/Minus Query 4752 AATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCAT-ATG 4810 |||||||||||||||||||||||| |||||| ||| || | || ||||||| ||| ||| Sbjct 498 AATAGTATATTACACTACAAGGGCCGAAAGT-TGAATTTTCGGCCCTGCGCGTCATGATG 440 Query 4811 C-CCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCA 4869 | |||||||||||||||| || | || | | | ||| Sbjct 439 CGCCGAGGCGAAGCCGAGA----------------TT------TTTCGATTATA-GCCGG 403 Query 4870 TGTAGTGTATACTAGTTTTCTTACTATGCGGTCGAAAGTACGTTAAAAATTGC------- 4922 | | | ||||| | ||||||| || ||||||||||||||||| |||| Sbjct 402 TTTT-TATATACGATTTTTCTTCATAGCCGGTCGAAAGTACGTTATTAATTTTATTTTTT 344 Query 4923 ------------GTTGaaaaaaaT-----TGATGCCTGCCCCCGACATTTGCGGCACGAG 4965 ||||| | || ||||||||||||||||||||||||||||||| Sbjct 343 TTCACTTTAAATGTTGATGAGCATGTTTTTGATGCCTGCCCCCGACATTTGCGGCACGAG 284 Query 4966 CGAAGCGAGTGCTGCTGGTCggggggggCAGGCATCAAATACA 5008 |||||||||||||||||||| |||||||||||||| ||||||| Sbjct 283 CGAAGCGAGTGCTGCTGGTC-GGGGGGGCAGGCATAAAATACA 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 55763145941920