Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5686 100 4e-16 seq4102 91.5 2e-13 seq2744 84.2 3e-11 >seq5686 Length=2262380 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 ||||||| | || |||||||||||||| || || |||| ||| ||||| || |||| | Sbjct 1101220 CACTAAAGACCTTCTTTGTTTCCTTGTGCAGGTTGGATATGGCAATTCTAGCTGCTAAAG 1101279 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 | |||||||| |||||||| | | ||| || || |||| ||||||| | |||| Sbjct 1101280 TTGCATAATCTGGATGTTGATTGATCATAGTCGCCGCAGTTTCAGCTGCCAAGTTATCCA 1101339 Query 64075 ATTCTACCGTTGTTACTCCA 64094 |||| | |||||| |||||| Sbjct 1101340 ATTCGATCGTTGTCACTCCA 1101359 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 62571 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62630 ||| |||||| || || || |||| || ||||| ||| ||||| || ||||| || Sbjct 1099430 CCTTCATATGACTCATAAGGACCTTTCTCAATAGCTATTTCGCAACTTGCTTCTAAAGCG 1099489 Query 62631 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 62690 || ||||||| ||||| || || | | || || || | ||||| ||| |||||| Sbjct 1099490 CCATAATAAAGAGTTTCAAAAATTTGGATGTTGAGTTCCTTAGCTTCGTCGCTTTCAAAT 1099549 Query 62691 GGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62740 ||||| | | | || ||||| || ||||||||||| |||| |||||| Sbjct 1099550 GGATACCTCATTAAGATCAACGCATCTGCTAATCCTTGTACACTAATACC 1099599 >seq4102 Length=4342353 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 62244 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 62303 |||| ||||||| | || | |||| || | || || || | |||||| ||| Sbjct 713454 TGAACGGATCCAAAGTTCGCGAGAATCTCGTTTTGCATGTCTTCGTCCCATAAACCTCTG 713395 Query 62304 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 62363 | || || ||| || ||||||||||| || | ||| |||||||||||||| | | Sbjct 713394 GCAGTCAAGTCTCGCAGTAGATGCGGATTGACGATGACAAACTCTCCAGACAATACGCGC 713335 Query 62364 CGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCA 62423 | ||| ||||| || || |||||||| | || || ||||| || ||||| || || Sbjct 713334 CTCACGTAGATATTGCTCGTGTACGGTTCAATAGATTCGTTATTCCCTAAAATCTGCGCT 713275 Query 62424 GTTGATGCAGTCGGCATAGGTGC 62446 || || || || ||||||||||| Sbjct 713274 GTCGAGGCCGTTGGCATAGGTGC 713252 >seq2744 Length=396707 Score = 84.2 bits (92), Expect = 3e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATA 33860 ||||||||| | |||||||| || || | |||||||||||||| | |||||| ||| Sbjct 260281 TACTTCTTCTATGGTCCAAAAAGAGGCTACAGCCTTTTTATACATCTCCCAGATATCAGG 260222 Query 33861 ATATTGGATTGGGAAAATAACAAATCTATTTGGA 33894 |||||| || || ||||| ||||| | ||||||| Sbjct 260221 ATATTGAATAGGAAAAATTACAAAACGATTTGGA 260188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622405928964760