Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08]
69,511 sequences; 396,024,718 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq5686 100 4e-16
seq4102 91.5 2e-13
seq2744 84.2 3e-11
>seq5686
Length=2262380
Score = 100 bits (110), Expect = 4e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014
||||||| | || |||||||||||||| || || |||| ||| ||||| || |||| |
Sbjct 1101220 CACTAAAGACCTTCTTTGTTTCCTTGTGCAGGTTGGATATGGCAATTCTAGCTGCTAAAG 1101279
Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074
| |||||||| |||||||| | | ||| || || |||| ||||||| | ||||
Sbjct 1101280 TTGCATAATCTGGATGTTGATTGATCATAGTCGCCGCAGTTTCAGCTGCCAAGTTATCCA 1101339
Query 64075 ATTCTACCGTTGTTACTCCA 64094
|||| | |||||| ||||||
Sbjct 1101340 ATTCGATCGTTGTCACTCCA 1101359
Score = 91.5 bits (100), Expect = 2e-13
Identities = 122/170 (72%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 62571 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62630
||| |||||| || || || |||| || ||||| ||| ||||| || ||||| ||
Sbjct 1099430 CCTTCATATGACTCATAAGGACCTTTCTCAATAGCTATTTCGCAACTTGCTTCTAAAGCG 1099489
Query 62631 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 62690
|| ||||||| ||||| || || | | || || || | ||||| ||| ||||||
Sbjct 1099490 CCATAATAAAGAGTTTCAAAAATTTGGATGTTGAGTTCCTTAGCTTCGTCGCTTTCAAAT 1099549
Query 62691 GGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62740
||||| | | | || ||||| || ||||||||||| |||| ||||||
Sbjct 1099550 GGATACCTCATTAAGATCAACGCATCTGCTAATCCTTGTACACTAATACC 1099599
>seq4102
Length=4342353
Score = 91.5 bits (100), Expect = 2e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 62244 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 62303
|||| ||||||| | || | |||| || | || || || | |||||| |||
Sbjct 713454 TGAACGGATCCAAAGTTCGCGAGAATCTCGTTTTGCATGTCTTCGTCCCATAAACCTCTG 713395
Query 62304 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 62363
| || || ||| || ||||||||||| || | ||| |||||||||||||| | |
Sbjct 713394 GCAGTCAAGTCTCGCAGTAGATGCGGATTGACGATGACAAACTCTCCAGACAATACGCGC 713335
Query 62364 CGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCA 62423
| ||| ||||| || || |||||||| | || || ||||| || ||||| || ||
Sbjct 713334 CTCACGTAGATATTGCTCGTGTACGGTTCAATAGATTCGTTATTCCCTAAAATCTGCGCT 713275
Query 62424 GTTGATGCAGTCGGCATAGGTGC 62446
|| || || || |||||||||||
Sbjct 713274 GTCGAGGCCGTTGGCATAGGTGC 713252
>seq2744
Length=396707
Score = 84.2 bits (92), Expect = 3e-11
Identities = 75/94 (80%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATA 33860
||||||||| | |||||||| || || | |||||||||||||| | |||||| |||
Sbjct 260281 TACTTCTTCTATGGTCCAAAAAGAGGCTACAGCCTTTTTATACATCTCCCAGATATCAGG 260222
Query 33861 ATATTGGATTGGGAAAATAACAAATCTATTTGGA 33894
|||||| || || ||||| ||||| | |||||||
Sbjct 260221 ATATTGAATAGGAAAAATTACAAAACGATTTGGA 260188
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622405928964760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |