Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq5117 122 8e-23 seq68007 111 2e-19 seq5959 111 2e-19 seq52431 93.3 4e-14 >seq5117 Length=2329582 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | ||||| ||| | ||||| | || | || | Sbjct 1167861 ATGCAGATATTTGTCAAGACTCTCACTGGGAAAACTATCACACTGGAGGTCGAGGCTTCG 1167920 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| |||||| | || ||| ||| ||| |||||||| || || |||||||||||| Sbjct 1167921 GACACGATCGAGAATGTAAAAGCAAAAATTCAAGACAAAGAGGGCATTCCTCCCGATCAA 1167980 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||||| |||| || ||||| |||||||| || | ||| | |||||| || Sbjct 1167981 CAAAGACTGATTTTCGCTGGCAAGCAACTCGAGGACGGACGAACTTTGTCCGACTACAAT 1168040 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA 26998 || || ||||||||||| | || || || || |||||||||| ||||| Sbjct 1168041 ATCCAGAAAGAATCTACACTTCACCTTGTACTTCGACTTAGAGGCGGAAA 1168090 Score = 111 bits (122), Expect = 2e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| || || ||||| | ||||| | ||| | || | Sbjct 1167633 ATGCAGATTTTTGTCAAAACTTTGACGGGAAAGACCATCACATTGGAAGTTGAGGCGTCA 1167692 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| |||||| | |||||| || ||| ||||| ||||| || ||||| |||||| Sbjct 1167693 GACACGATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGAATTCCTCCAGATCAA 1167752 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG-AAAC-GTCAGCGACTATA 26946 || ||| | || | | || |||||||||||||| | | | | || ||| || |||| Sbjct 1167753 CAGAGATTGATCTTTGCTGGAAAACAACTCGAAGACGGTCGCACACTGTC--TGATTATA 1167810 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||||| ||||| ||| | ||| |||| |||| ||| | || || Sbjct 1167811 ACATTCAAAAGGAATCCACTCTGCATTTGGTTTTGAGGCTTCGTGGCGG 1167859 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| ||||| ||||| | ||||| | || | || | Sbjct 1167177 ATGCAGATTTTCGTCAAAACTTTAACAGGAAAGACCATCACATTGGAGGTCGAGGCTTCA 1167236 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| |||||| | || || || ||| ||||||||||| || |||||||||||| Sbjct 1167237 GACACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAAGGTATTCCTCCCGATCAA 1167296 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||| | || | | ||| ||||| |||||||| | | | | || || || Sbjct 1167297 CAGAGATTGATCTTTGCCGGAAAACAGCTCGAAGACGGACGCACATTGTCTGATTACAAT 1167356 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||||||||| || | ||| |||| |||||||| | || || Sbjct 1167357 ATTCAAAAAGAATCCACATTGCATTTGGTTTTGAGACTTCGCGGTGG 1167403 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| |||||| | ||||| ||| ||||||| | ||| | ||| || Sbjct 1167405 ATGCAGATTTTTGTCAAAACACTTACTGGTAAAACGATCACTCTGGAAGTCGAAGCATCA 1167464 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| |||||| | || ||| || ||| ||||||||||| || ||||| ||||| Sbjct 1167465 GACACGATCGAGAATGTTAAAGCTAAAATTCAGGACAAAGAAGGAATCCCTCCGGATCAG 1167524 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | | || || ||||| ||||| | | | || || ||||| Sbjct 1167525 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGTACTCTCTCAGATTATAAT 1167584 Query 26949 ATTCAAAAAGAATCTAC 26965 ||||| || ||||| || Sbjct 1167585 ATTCAGAAGGAATCGAC 1167601 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || ||||| || || ||||| | || || | || ||||| | Sbjct 1164795 AATGCAGATCTTCGTTAAAACCTTGACGGGAAAGACAATTACTTTGGAGGTAGAAGCTTC 1164854 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| |||||| | |||||| || ||| ||||||||||| || ||||| ||||| Sbjct 1164855 GGACACGATCGAGAACGTCAAAGCGAAAATTCAGGACAAAGAAGGCATCCCTCCGGATCA 1164914 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||||||| | || | | || || ||||| ||||| | | | || || ||||| Sbjct 1164915 ACAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGTACTCTCTCAGATTATAA 1164974 Query 26948 CATTCAAAAAGAATCTAC 26965 ||||| || ||||| || Sbjct 1164975 TATTCAGAAGGAATCGAC 1164992 >seq68007 Length=840 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || |||||||| | || || ||| | |||||| | ||| | ||| | Sbjct 13 ATGCAGATCTTCGTAAAAACTCTTACGGGTAAAACCATCACCCTTGAAGTTGAAGCTTCA 72 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | || || || || |||||||| || || || || |||||| Sbjct 73 GACACAATAGAAAATGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCCCCAGATCAA 132 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | |||| | ||||||||||| || |||| |||| | |||||||||| Sbjct 133 CAACGTTTGATTTTTGCTGGCAAACAACTGGAGGATGGCAGAACTCTTTCCGACTATAAC 192 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||||| ||||| || | |||||||| ||| | ||| ||||||||| Sbjct 193 ATTCAAAAGGAATCAACACTTCATCTGGTTCTGCGCCTTCGAGGAGGAA 241 >seq5959 Length=1871824 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| | ||||||||| | ||||| | || | ||| | Sbjct 1420863 ATGCAAATCTTTGTGAAAACCCTCACTGGAAAAACCATCACTCTTGAGGTGGAAGCTTCT 1420804 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || ||| | |||||| ||||| ||||||||||| || ||||| ||||| Sbjct 1420803 GATACTATAGAGAATGTCAAAGCTAAGATCCAAGACAAAGAAGGTATCCCTCCAGATCAG 1420744 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | || || | | || || ||||| ||||||| |||| || |||||| ||| Sbjct 1420743 CAACGTCTGATCTTTGCTGGAAAGCAACTGGAAGATGGAAGAACTCTCTCCGACTACAAC 1420684 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || || || || ||||| | ||||| || || | ||| ||||||||| Sbjct 1420683 ATCCAGAAGGAGTCTACACTTCATCTAGTTCTACGTCTTCGAGGAGGAA 1420635 >seq52431 Length=384 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || ||| | |||||| | ||| | ||| | Sbjct 78 ATGCAGATCTTCGTGAAGACTCTCACGGGTAAAACCATCACCCTTGAAGTTGAAGCTTCA 137 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | || || || || |||||||| || || ||||| ||||| Sbjct 138 GACACAATAGAAAATGTGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCTCCAGATCAG 197 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || |||| | || |||||||| || |||| ||||| | |||||| ||| Sbjct 198 CAGCGTCTGATTTTTGCTGGTAAACAACTTGAGGATGGTAGAACTCTTTCCGACTACAAC 257 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||||| ||||| || | |||||||| || | ||| ||||||||| Sbjct 258 ATTCAAAAGGAATCCACACTTCATCTGGTTTTGCGTCTTCGAGGAGGAA 306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478246496223920