Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5636 86.0 2e-11 >seq5636 Length=11654 Score = 86.0 bits (94), Expect = 2e-11 Identities = 167/244 (68%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 111314 TTTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTG 111373 ||| ||| | || ||||| ||| || || |||| | | || || ||||| ||||| Sbjct 1348 TTTCCCATTACTGACAACTAAGAGAGTATTTTGGCGAGCGGTGGTTGAGGAACTGCTGTG 1289 Query 111374 GTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGA 111433 |||||| ||| |||||| | || ||| | ||| || | | | |||||||| Sbjct 1288 GTTTATCAAAGGATCGACAAATTCTAAGGAATTAACAGACAAGGGTATTCACATTTGGGA 1229 Query 111434 TGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAAC---GAAGAAGG 111490 || ||||| || || | ||||| || || || ||| | |||| ||||| || Sbjct 1228 TGAGAATGGTTCGCGGGCTTTTCTGGACTCTTACGG-CTTCAC--CAACCGAGAAGAGGG 1172 Query 111491 TGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCAT 111550 |||| | || || || || || ||||||||||| || ||||| || || |||||| ||| Sbjct 1171 TGATTTGGGGCCTGTCTATGGTTTTCAATGGCGACATTTTGGCGCCGAATACAAAGACAT 1112 Query 111551 GCAC 111554 |||| Sbjct 1111 GCAC 1108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302192820657602