Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq5117 127 2e-24 seq5959 109 5e-19 seq68007 89.7 4e-13 seq1104 82.4 7e-11 >seq5117 Length=2329582 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| ||| | || || | || |||||||| Sbjct 1167861 ATGCAGATATTTGTCAAGACTCTCACTGGGAAAACTATCACACTGGAGGTCGAGGCTTCG 1167920 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | || ||| ||| ||| |||||||| ||||| |||||||||||| Sbjct 1167921 GACACGATCGAGAATGTAAAAGCAAAAATTCAAGACAAAGAGGGCATTCCTCCCGATCAA 1167980 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || |||||||||| || |||||||||||||| || | ||| | ||| || || Sbjct 1167981 CAAAGACTGATTTTCGCTGGCAAGCAACTCGAGGACGGACGAACTTTGTCCGACTACAAT 1168040 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || |||||||||||| |||| Sbjct 1168041 ATCCAGAAAGAATCTACACTTCA 1168063 Score = 118 bits (130), Expect = 9e-22 Identities = 159/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| ||||| ||||| | || || | || |||||||| Sbjct 1167177 ATGCAGATTTTCGTCAAAACTTTAACAGGAAAGACCATCACATTGGAGGTCGAGGCTTCA 1167236 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | || || || ||| ||||||||||| || |||||||||||| Sbjct 1167237 GACACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAAGGTATTCCTCCCGATCAA 1167296 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA-TGACAGA-AACGTCAGCGATTATA 24168 |||||| |||| | | ||| || || |||||||| ||| | | ||| ||||| | Sbjct 1167297 CAGAGATTGATCTTTGCCGGAAAACAGCTCGAAGACGGACGCACATTGTC--TGATTACA 1167354 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 | |||||||||||||| ||| | ||||| || || ||| Sbjct 1167355 ATATTCAAAAAGAATCCACATTGCATTTGGTTTTGAGA 1167392 Score = 116 bits (128), Expect = 3e-21 Identities = 158/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || || ||||| | || || | ||||| ||||| Sbjct 1167633 ATGCAGATTTTTGTCAAAACTTTGACGGGAAAGACCATCACATTGGAAGTTGAGGCGTCA 1167692 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | |||||| || ||| ||||| ||||| || ||||| |||||| Sbjct 1167693 GACACGATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGAATTCCTCCAGATCAA 1167752 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA-TGACAGAAAC-GTCAGCGATTATA 24168 |||||| |||| | | || || ||||||||||| | | | || ||| ||||||| Sbjct 1167753 CAGAGATTGATCTTTGCTGGAAAACAACTCGAAGACGGTCGCACACTGTC--TGATTATA 1167810 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 |||||||||| ||||| || | ||||| || || || Sbjct 1167811 ACATTCAAAAGGAATCCACTCTGCATTTGGTTTTGAG 1167847 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| |||||| | ||||| ||| |||| || | |||||||| || Sbjct 1167405 ATGCAGATTTTTGTCAAAACACTTACTGGTAAAACGATCACTCTGGAAGTCGAAGCATCA 1167464 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | || ||| || ||| ||||||||||| || ||||| ||||| Sbjct 1167465 GACACGATCGAGAATGTTAAAGCTAAAATTCAGGACAAAGAAGGAATCCCTCCGGATCAG 1167524 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | || |||||||| ||||| | | | | || |||||||| Sbjct 1167525 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGTACTCTCTCAGATTATAAT 1167584 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||| || ||||| || Sbjct 1167585 ATTCAGAAGGAATCGAC 1167601 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || ||||| || || ||||| | ||||| | || || || || Sbjct 1164795 AATGCAGATCTTCGTTAAAACCTTGACGGGAAAGACAATTACTTTGGAGGTAGAAGCTTC 1164854 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| |||||| | |||||| || ||| |||||||||||||| ||||| ||||| Sbjct 1164855 GGACACGATCGAGAACGTCAAAGCGAAAATTCAGGACAAAGAAGGCATCCCTCCGGATCA 1164914 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||| |||| | | || |||||||| ||||| | | | | || |||||||| Sbjct 1164915 ACAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGTACTCTCTCAGATTATAA 1164974 Query 24170 CATTCAAAAAGAATCTAC 24187 ||||| || ||||| || Sbjct 1164975 TATTCAGAAGGAATCGAC 1164992 Score = 102 bits (112), Expect = 7e-17 Identities = 157/219 (72%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | ||||| ||| | || || | || |||||||| Sbjct 1166948 ATGCAGATTTTCGTCAAAACTCTCACTGGCAAAACTATCACATTGGAGGTCGAGGCTTCA 1167007 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | || || || ||| |||||||| || || ||||||||||| Sbjct 1167008 GACACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAGGGTATTCCTCCCGATCAG 1167067 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA-TGACAGA-AACGTCAGCGATTATA 24168 |||||| |||| | | ||| || ||||||||||| ||| | | ||| ||||| | Sbjct 1167068 CAGAGATTGATCTTTGCCGGAAAACAACTCGAAGACGGACGCACATTGTC--TGATTACA 1167125 Query 24169 ACATTCAA-AAAGAATCTACAATTCATTTAGTGTTAAGA 24206 | |||||| || |||||||| | |||||||| || ||| Sbjct 1167126 ATATTCAAGAAGGAATCTACGTTACATTTAGTTTTGAGA 1167164 Score = 82.4 bits (90), Expect = 7e-11 Identities = 91/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 24089 AGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGA 24148 ||| || || ||||||||||| |||||| |||| | | ||| || ||||| ||||||| Sbjct 1166818 AGAGGGTATTCCTCCCGATCAGCAGAGATTGATCTTTGCCGGAAAACAACTTGAAGATGG 1166877 Query 24149 CAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 | || | | | |||||||||||||| |||||||| ||| | ||||| || || ||| Sbjct 1166878 TCG-CACATTATCTGATTATAACATTCAGAAAGAATCCACATTGCATTTGGTTTTGAGA 1166935 >seq5959 Length=1871824 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | ||||||||| | || || | || || || || Sbjct 1420863 ATGCAAATCTTTGTGAAAACCCTCACTGGAAAAACCATCACTCTTGAGGTGGAAGCTTCT 1420804 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || ||| | |||||| ||||| ||||||||||| || ||||| ||||| Sbjct 1420803 GATACTATAGAGAATGTCAAAGCTAAGATCCAAGACAAAGAAGGTATCCCTCCAGATCAG 1420744 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | ||||| | | || |||||||| ||||||| |||| || ||| || ||| Sbjct 1420743 CAACGTCTGATCTTTGCTGGAAAGCAACTGGAAGATGGAAGAACTCTCTCCGACTACAAC 1420684 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || || || || |||||| ||||| |||| || | | |||||||| Sbjct 1420683 ATCCAGAAGGAGTCTACACTTCATCTAGTTCTACGTCTTCGAGGAGGA 1420636 >seq68007 Length=840 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || |||||||| | || || ||| | || ||| | ||||| || || Sbjct 13 ATGCAGATCTTCGTAAAAACTCTTACGGGTAAAACCATCACCCTTGAAGTTGAAGCTTCA 72 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || || || || |||||||| || || || || |||||| Sbjct 73 GACACAATAGAAAATGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCCCCAGATCAA 132 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||||| | ||||| ||||| || |||| ||||| | ||| |||||| Sbjct 133 CAACGTTTGATTTTTGCTGGCAAACAACTGGAGGATGGCAGAACTCTTTCCGACTATAAC 192 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 |||||||| ||||| ||| ||||| Sbjct 193 ATTCAAAAGGAATCAACACTTCAT 216 >seq1104 Length=1074228 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | || || || | |||||| | || || |||||| | Sbjct 390845 ATGCAGATCTTTGTGAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTAGAGGCCTCC 390904 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||| ||||| || || || || || |||||| Sbjct 390905 GACACCATCGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCAGATCAA 390964 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||| || || || |||| | | | |||||| ||| Sbjct 390965 CAGCGGCTCATCTTCGCTGGCAAACAGCTGGAGGATGGGCGCACTCTTTCCGATTACAAC 391024 Query 24171 ATTCAAAAAG 24180 ||||| |||| Sbjct 391025 ATTCAGAAAG 391034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429571773134205