Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08]
69,511 sequences; 396,024,718 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq5117 127 2e-24
seq5959 109 5e-19
seq68007 89.7 4e-13
seq1104 82.4 7e-11
>seq5117
Length=2329582
Score = 127 bits (140), Expect = 2e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || || | ||||| ||| | || || | || ||||||||
Sbjct 1167861 ATGCAGATATTTGTCAAGACTCTCACTGGGAAAACTATCACACTGGAGGTCGAGGCTTCG 1167920
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| |||||| | || ||| ||| ||| |||||||| ||||| ||||||||||||
Sbjct 1167921 GACACGATCGAGAATGTAAAAGCAAAAATTCAAGACAAAGAGGGCATTCCTCCCGATCAA 1167980
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|| |||||||||| || |||||||||||||| || | ||| | ||| || ||
Sbjct 1167981 CAAAGACTGATTTTCGCTGGCAAGCAACTCGAGGACGGACGAACTTTGTCCGACTACAAT 1168040
Query 24171 ATTCAAAAAGAATCTACAATTCA 24193
|| || |||||||||||| ||||
Sbjct 1168041 ATCCAGAAAGAATCTACACTTCA 1168063
Score = 118 bits (130), Expect = 9e-22
Identities = 159/218 (73%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || ||||| ||||| ||||| | || || | || ||||||||
Sbjct 1167177 ATGCAGATTTTCGTCAAAACTTTAACAGGAAAGACCATCACATTGGAGGTCGAGGCTTCA 1167236
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| |||||| | || || || ||| ||||||||||| || ||||||||||||
Sbjct 1167237 GACACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAAGGTATTCCTCCCGATCAA 1167296
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA-TGACAGA-AACGTCAGCGATTATA 24168
|||||| |||| | | ||| || || |||||||| ||| | | ||| ||||| |
Sbjct 1167297 CAGAGATTGATCTTTGCCGGAAAACAGCTCGAAGACGGACGCACATTGTC--TGATTACA 1167354
Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206
| |||||||||||||| ||| | ||||| || || |||
Sbjct 1167355 ATATTCAAAAAGAATCCACATTGCATTTGGTTTTGAGA 1167392
Score = 116 bits (128), Expect = 3e-21
Identities = 158/217 (73%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| ||||| || || ||||| | || || | ||||| |||||
Sbjct 1167633 ATGCAGATTTTTGTCAAAACTTTGACGGGAAAGACCATCACATTGGAAGTTGAGGCGTCA 1167692
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| |||||| | |||||| || ||| ||||| ||||| || ||||| ||||||
Sbjct 1167693 GACACGATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGAATTCCTCCAGATCAA 1167752
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA-TGACAGAAAC-GTCAGCGATTATA 24168
|||||| |||| | | || || ||||||||||| | | | || ||| |||||||
Sbjct 1167753 CAGAGATTGATCTTTGCTGGAAAACAACTCGAAGACGGTCGCACACTGTC--TGATTATA 1167810
Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205
|||||||||| ||||| || | ||||| || || ||
Sbjct 1167811 ACATTCAAAAGGAATCCACTCTGCATTTGGTTTTGAG 1167847
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| |||||| | ||||| ||| |||| || | |||||||| ||
Sbjct 1167405 ATGCAGATTTTTGTCAAAACACTTACTGGTAAAACGATCACTCTGGAAGTCGAAGCATCA 1167464
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| |||||| | || ||| || ||| ||||||||||| || ||||| |||||
Sbjct 1167465 GACACGATCGAGAATGTTAAAGCTAAAATTCAGGACAAAGAAGGAATCCCTCCGGATCAG 1167524
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||||| |||| | | || |||||||| ||||| | | | | || ||||||||
Sbjct 1167525 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGTACTCTCTCAGATTATAAT 1167584
Query 24171 ATTCAAAAAGAATCTAC 24187
||||| || ||||| ||
Sbjct 1167585 ATTCAGAAGGAATCGAC 1167601
Score = 105 bits (116), Expect = 6e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049
|||||| | || || ||||| || || ||||| | ||||| | || || || ||
Sbjct 1164795 AATGCAGATCTTCGTTAAAACCTTGACGGGAAAGACAATTACTTTGGAGGTAGAAGCTTC 1164854
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
||||| |||||| | |||||| || ||| |||||||||||||| ||||| |||||
Sbjct 1164855 GGACACGATCGAGAACGTCAAAGCGAAAATTCAGGACAAAGAAGGCATCCCTCCGGATCA 1164914
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169
||| ||| |||| | | || |||||||| ||||| | | | | || ||||||||
Sbjct 1164915 ACAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGTACTCTCTCAGATTATAA 1164974
Query 24170 CATTCAAAAAGAATCTAC 24187
||||| || ||||| ||
Sbjct 1164975 TATTCAGAAGGAATCGAC 1164992
Score = 102 bits (112), Expect = 7e-17
Identities = 157/219 (72%), Gaps = 5/219 (2%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || ||||| | ||||| ||| | || || | || ||||||||
Sbjct 1166948 ATGCAGATTTTCGTCAAAACTCTCACTGGCAAAACTATCACATTGGAGGTCGAGGCTTCA 1167007
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| |||||| | || || || ||| |||||||| || || |||||||||||
Sbjct 1167008 GACACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAGGGTATTCCTCCCGATCAG 1167067
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA-TGACAGA-AACGTCAGCGATTATA 24168
|||||| |||| | | ||| || ||||||||||| ||| | | ||| ||||| |
Sbjct 1167068 CAGAGATTGATCTTTGCCGGAAAACAACTCGAAGACGGACGCACATTGTC--TGATTACA 1167125
Query 24169 ACATTCAA-AAAGAATCTACAATTCATTTAGTGTTAAGA 24206
| |||||| || |||||||| | |||||||| || |||
Sbjct 1167126 ATATTCAAGAAGGAATCTACGTTACATTTAGTTTTGAGA 1167164
Score = 82.4 bits (90), Expect = 7e-11
Identities = 91/119 (76%), Gaps = 2/119 (2%)
Strand=Plus/Plus
Query 24089 AGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGA 24148
||| || || ||||||||||| |||||| |||| | | ||| || ||||| |||||||
Sbjct 1166818 AGAGGGTATTCCTCCCGATCAGCAGAGATTGATCTTTGCCGGAAAACAACTTGAAGATGG 1166877
Query 24149 CAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206
| || | | | |||||||||||||| |||||||| ||| | ||||| || || |||
Sbjct 1166878 TCG-CACATTATCTGATTATAACATTCAGAAAGAATCCACATTGCATTTGGTTTTGAGA 1166935
>seq5959
Length=1871824
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| ||||| | ||||||||| | || || | || || || ||
Sbjct 1420863 ATGCAAATCTTTGTGAAAACCCTCACTGGAAAAACCATCACTCTTGAGGTGGAAGCTTCT 1420804
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| || || ||| | |||||| ||||| ||||||||||| || ||||| |||||
Sbjct 1420803 GATACTATAGAGAATGTCAAAGCTAAGATCCAAGACAAAGAAGGTATCCCTCCAGATCAG 1420744
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|| | ||||| | | || |||||||| ||||||| |||| || ||| || |||
Sbjct 1420743 CAACGTCTGATCTTTGCTGGAAAGCAACTGGAAGATGGAAGAACTCTCTCCGACTACAAC 1420684
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218
|| || || || |||||| ||||| |||| || | | ||||||||
Sbjct 1420683 ATCCAGAAGGAGTCTACACTTCATCTAGTTCTACGTCTTCGAGGAGGA 1420636
>seq68007
Length=840
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || |||||||| | || || ||| | || ||| | ||||| || ||
Sbjct 13 ATGCAGATCTTCGTAAAAACTCTTACGGGTAAAACCATCACCCTTGAAGTTGAAGCTTCA 72
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| || || | || || || || |||||||| || || || || ||||||
Sbjct 73 GACACAATAGAAAATGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCCCCAGATCAA 132
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|| | |||||| | ||||| ||||| || |||| ||||| | ||| ||||||
Sbjct 133 CAACGTTTGATTTTTGCTGGCAAACAACTGGAGGATGGCAGAACTCTTTCCGACTATAAC 192
Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194
|||||||| ||||| ||| |||||
Sbjct 193 ATTCAAAAGGAATCAACACTTCAT 216
>seq1104
Length=1074228
Score = 82.4 bits (90), Expect = 7e-11
Identities = 132/190 (69%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| ||||| | || || || | |||||| | || || |||||| |
Sbjct 390845 ATGCAGATCTTTGTGAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTAGAGGCCTCC 390904
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||||||| | || || ||||| ||||| || || || || || ||||||
Sbjct 390905 GACACCATCGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCAGATCAA 390964
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| | || || | || ||||| || || || |||| | | | |||||| |||
Sbjct 390965 CAGCGGCTCATCTTCGCTGGCAAACAGCTGGAGGATGGGCGCACTCTTTCCGATTACAAC 391024
Query 24171 ATTCAAAAAG 24180
||||| ||||
Sbjct 391025 ATTCAGAAAG 391034
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429571773134205
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