Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08]
69,511 sequences; 396,024,718 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq2744 104 3e-17
seq4102 96.9 4e-15
seq5686 95.1 2e-14
>seq2744
Length=396707
Score = 104 bits (114), Expect = 3e-17
Identities = 94/116 (81%), Gaps = 2/116 (2%)
Strand=Plus/Minus
Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 33218
|||||||| | |||||||| || || | |||||||||||||| | |||||| ||| ||
Sbjct 260280 ACTTCTTCTATGGTCCAAAAAGAGGCTACAGCCTTTTTATACATCTCCCAGATATCAGGA 260221
Query 33219 TATTGAATTGGAAAAATAACAAATCTATTTGGA-TTTTTTGCAAGGATTGGTTCCA 33273
|||||||| |||||||| ||||| | ||||||| || |||| || | ||||||||
Sbjct 260220 TATTGAATAGGAAAAATTACAAAACGATTTGGACCTTCTTGC-AGCAGTGGTTCCA 260166
>seq4102
Length=4342353
Score = 96.9 bits (106), Expect = 4e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 62099 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 62158
|||| ||||||| | || | |||| || | || || || | |||||| |||
Sbjct 713454 TGAACGGATCCAAAGTTCGCGAGAATCTCGTTTTGCATGTCTTCGTCCCATAAACCTCTG 713395
Query 62159 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 62218
| || || ||| || ||||||||||| || | ||| |||||||||||||| | |
Sbjct 713394 GCAGTCAAGTCTCGCAGTAGATGCGGATTGACGATGACAAACTCTCCAGACAATACGCGC 713335
Query 62219 CGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCA 62278
| ||| ||||| || || |||||||| | ||| || ||||| || ||||| || ||
Sbjct 713334 CTCACGTAGATATTGCTCGTGTACGGTTCAATAGATTCGTTATTCCCTAAAATCTGCGCT 713275
Query 62279 GTTGATGCAGTCGGCATAGGTGC 62301
|| || || || |||||||||||
Sbjct 713274 GTCGAGGCCGTTGGCATAGGTGC 713252
>seq5686
Length=2262380
Score = 95.1 bits (104), Expect = 2e-14
Identities = 123/170 (72%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 62426 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62485
||| |||||| || || || |||| || ||||| ||| ||||| || ||||| ||
Sbjct 1099430 CCTTCATATGACTCATAAGGACCTTTCTCAATAGCTATTTCGCAACTTGCTTCTAAAGCG 1099489
Query 62486 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAAT 62545
|| ||||||| ||||| || || | | || || || | ||||| ||| ||||||
Sbjct 1099490 CCATAATAAAGAGTTTCAAAAATTTGGATGTTGAGTTCCTTAGCTTCGTCGCTTTCAAAT 1099549
Query 62546 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 62595
||||| | | | || ||||| |||||||||||||| |||| ||||||
Sbjct 1099550 GGATACCTCATTAAGATCAACGCATCTGCTAATCCTTGTACACTAATACC 1099599
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633081445075600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |