Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq5117 138 1e-27 seq5959 100 2e-16 >seq5117 Length=2329582 Score = 138 bits (152), Expect = 1e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || ||||| || || || |||||||| | || || ||| | || Sbjct 1167177 ATGCAGATTTTCGTCAAAACTTTAACAGGAAAGACCATCACATTGGAGGTCGAGGCTTCA 1167236 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| ||||| | |||| ||| ||||||||||| ||||| || || || Sbjct 1167237 GACACAATCGAGAACGTGAAGGCGAAAATTCAA-GACAAAGAAGGTATTCCTCCCGATCA 1167295 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| | | || |||||||| ||||| | ||||| | ||||| || |||||||| Sbjct 1167296 ACAGAGATTGATCTTTGCCGGAAAACAGCTCGAAGACGGACGCACATTGTCTGATTACAA 1167355 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||||||||||||||||| | ||||| || Sbjct 1167356 TATTCAAAAAGAATCCACATTGCATTTGGT 1167385 Score = 127 bits (140), Expect = 2e-24 Identities = 157/211 (74%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || ||| | || || ||| | |||||| | || || ||| | || Sbjct 1166948 ATGCAGATTTTCGTCAAAACTCTCACTGGCAAAACTATCACATTGGAGGTCGAGGCTTCA 1167007 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| ||||| | |||| ||| |||||||| || ||||| || || || Sbjct 1167008 GACACAATCGAGAACGTGAAGGCGAAAATTCAA-GACAAAGAGGGTATTCCTCCCGATCA 1167066 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || |||||||| |||||| | ||||| | ||||| || |||||||| Sbjct 1167067 GCAGAGATTGATCTTTGCCGGAAAACAACTCGAAGACGGACGCACATTGTCTGATTACAA 1167126 Query 25178 TATTCAA-AAAGAATCCACGCTACATTTAGT 25207 ||||||| || ||||| ||| |||||||||| Sbjct 1167127 TATTCAAGAAGGAATCTACGTTACATTTAGT 1167157 Score = 113 bits (124), Expect = 4e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || ||||||||||| |||||||| || |||| || |||| || ||| | Sbjct 1164565 ACCATGCAGATTTTTGTAAAGACGTTGACCGGAAAGACCATAACCCTCGAGGTCGAGGCT 1164624 Query 25056 TCTGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || |||||||| ||| | || ||||| | ||| ||||| ||||| || |||||||| Sbjct 1164625 TCCGACACTATTGAGAACGTAAAGGCAAAGATTCA-GGACAAGGAAGGCATCCCACCTGA 1164683 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| || || | || || || || || || | ||||| | ||||| || || || Sbjct 1164684 CCAGCAACGTTTGATCTTCGCTGGAAAGCAGCTTGAAGACGGACGCACCTTGTCTGACTA 1164743 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAG 25213 |||||| || || ||||| || || || || || || || Sbjct 1164744 CAATATCCAGAAGGAATCAACCCTTCACTTGGTTCTCAG 1164782 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | || |||||| | ||||| | ||||| || | || Sbjct 1167405 ATGCAGATTTTTGTCAAAACACTTACTGGTAAAACGATCACTCTGGAAGTCGAAGCATCA 1167464 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| |||||| | || |||| |||| ||| ||||||||||| || || || || Sbjct 1167465 GACACGATCGAG--AATGTTAAAGCTAAAATTCAG-GACAAAGAAGGAATCCCTCCGGAT 1167521 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || ||||| || || ||| | ||||| | || ||| | ||||| Sbjct 1167522 CAGCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGTACTCTCTCAGATTAT 1167581 Query 25176 AATATTCAAAAAGAATCCAC 25195 |||||||| || ||||| || Sbjct 1167582 AATATTCAGAAGGAATCGAC 1167601 >seq5959 Length=1871824 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || | || || ||| ||||||| | || ||||| | ||| Sbjct 1420863 ATGCAAATCTTTGTGAAAACCCTCACTGGAAAAACCATCACTCTTGAGGTGGAAGCTTCT 1420804 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| ||| | || |||| || | || ||||||||||| || || || || Sbjct 1420803 GATACTATAGAG--AATGTCAAAGCTAAGATCCAA-GACAAAGAAGGTATCCCTCCAGAT 1420747 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | || ||||| || || ||| | ||||||| | ||| | ||| ||| Sbjct 1420746 CAGCAACGTCTGATCTTTGCTGGAAAGCAACTGGAAGATGGAAGAACTCTCTCCGACTAC 1420687 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || || || || || ||| |||| ||| | || ||||||||| Sbjct 1420686 AACATCCAGAAGGAGTCTACACTTCATCTAGTTCTACGTCTTCGAGGAGGAA 1420635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432960899549465