Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08]
69,511 sequences; 396,024,718 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq5117 138 1e-27
seq5959 100 2e-16
>seq5117
Length=2329582
Score = 138 bits (152), Expect = 1e-27
Identities = 158/210 (75%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || ||||| || || || |||||||| | || || ||| | ||
Sbjct 1167177 ATGCAGATTTTCGTCAAAACTTTAACAGGAAAGACCATCACATTGGAGGTCGAGGCTTCA 1167236
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| |||||| ||||| | |||| ||| ||||||||||| ||||| || || ||
Sbjct 1167237 GACACAATCGAGAACGTGAAGGCGAAAATTCAA-GACAAAGAAGGTATTCCTCCCGATCA 1167295
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||| | | || |||||||| ||||| | ||||| | ||||| || ||||||||
Sbjct 1167296 ACAGAGATTGATCTTTGCCGGAAAACAGCTCGAAGACGGACGCACATTGTCTGATTACAA 1167355
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207
|||||||||||||||||| | ||||| ||
Sbjct 1167356 TATTCAAAAAGAATCCACATTGCATTTGGT 1167385
Score = 127 bits (140), Expect = 2e-24
Identities = 157/211 (74%), Gaps = 3/211 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || ||| | || || ||| | |||||| | || || ||| | ||
Sbjct 1166948 ATGCAGATTTTCGTCAAAACTCTCACTGGCAAAACTATCACATTGGAGGTCGAGGCTTCA 1167007
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| |||||| ||||| | |||| ||| |||||||| || ||||| || || ||
Sbjct 1167008 GACACAATCGAGAACGTGAAGGCGAAAATTCAA-GACAAAGAGGGTATTCCTCCCGATCA 1167066
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| | | || |||||||| |||||| | ||||| | ||||| || ||||||||
Sbjct 1167067 GCAGAGATTGATCTTTGCCGGAAAACAACTCGAAGACGGACGCACATTGTCTGATTACAA 1167126
Query 25178 TATTCAA-AAAGAATCCACGCTACATTTAGT 25207
||||||| || ||||| ||| ||||||||||
Sbjct 1167127 TATTCAAGAAGGAATCTACGTTACATTTAGT 1167157
Score = 113 bits (124), Expect = 4e-20
Identities = 158/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
|| ||||| || ||||||||||| |||||||| || |||| || |||| || ||| |
Sbjct 1164565 ACCATGCAGATTTTTGTAAAGACGTTGACCGGAAAGACCATAACCCTCGAGGTCGAGGCT 1164624
Query 25056 TCTGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| |||||||| ||| | || ||||| | ||| ||||| ||||| || ||||||||
Sbjct 1164625 TCCGACACTATTGAGAACGTAAAGGCAAAGATTCA-GGACAAGGAAGGCATCCCACCTGA 1164683
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||| || || | || || || || || || | ||||| | ||||| || || ||
Sbjct 1164684 CCAGCAACGTTTGATCTTCGCTGGAAAGCAGCTTGAAGACGGACGCACCTTGTCTGACTA 1164743
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAG 25213
|||||| || || ||||| || || || || || || ||
Sbjct 1164744 CAATATCCAGAAGGAATCAACCCTTCACTTGGTTCTCAG 1164782
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/200 (72%), Gaps = 6/200 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || || | || |||||| | ||||| | ||||| || | ||
Sbjct 1167405 ATGCAGATTTTTGTCAAAACACTTACTGGTAAAACGATCACTCTGGAAGTCGAAGCATCA 1167464
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| |||||| | || |||| |||| ||| ||||||||||| || || || ||
Sbjct 1167465 GACACGATCGAG--AATGTTAAAGCTAAAATTCAG-GACAAAGAAGGAATCCCTCCGGAT 1167521
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||| || | || ||||| || || ||| | ||||| | || ||| | |||||
Sbjct 1167522 CAGCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGTACTCTCTCAGATTAT 1167581
Query 25176 AATATTCAAAAAGAATCCAC 25195
|||||||| || ||||| ||
Sbjct 1167582 AATATTCAGAAGGAATCGAC 1167601
>seq5959
Length=1871824
Score = 100 bits (110), Expect = 2e-16
Identities = 163/232 (70%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| || || | || || ||| ||||||| | || ||||| | |||
Sbjct 1420863 ATGCAAATCTTTGTGAAAACCCTCACTGGAAAAACCATCACTCTTGAGGTGGAAGCTTCT 1420804
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| ||||| ||| | || |||| || | || ||||||||||| || || || ||
Sbjct 1420803 GATACTATAGAG--AATGTCAAAGCTAAGATCCAA-GACAAAGAAGGTATCCCTCCAGAT 1420747
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| || || | || ||||| || || ||| | ||||||| | ||| | ||| |||
Sbjct 1420746 CAGCAACGTCTGATCTTTGCTGGAAAGCAACTGGAAGATGGAAGAACTCTCTCCGACTAC 1420687
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
|| || || || || || || || ||| |||| ||| | || |||||||||
Sbjct 1420686 AACATCCAGAAGGAGTCTACACTTCATCTAGTTCTACGTCTTCGAGGAGGAA 1420635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 432960899549465
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |